Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00001 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCGCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGTCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATTGAGCAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGTTTATGCCGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCTGACTGCTCTAAAGCTTATACGTCAACATGGGGCTATAGAGGGTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCTGACGATTGGCCTTACAAAGAGGCTCGACAGCTTTTCAAAGAACCACTAGTATGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACACCAGACGAAGAAGGCTTGTTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAGAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCCTTTTTCAAGCCTGTTACTAATCCTTCAGTATCCATTAAACGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAATGAAGAAATCGAAGTCCGGTGGTAGTAAAAGAAAGTAG 1152 42.53 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKETSEKPTKQAIMKKSKSGGSKRK 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2977 19362 - MELO3C015225.2.1 Cme02g00001 319890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00001 383 MobiDBLite consensus disorder prediction 338 357 - -
Cme02g00001 383 Pfam XPG I-region 151 235 IPR006086 GO:0004518
Cme02g00001 383 Hamap Flap endonuclease 1 [fen]. 1 348 IPR023426 GO:0016788
Cme02g00001 383 CDD H3TH_FEN1-Euk 223 290 - -
Cme02g00001 383 SMART xpgn3 1 108 IPR006085 GO:0004518
Cme02g00001 383 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Cme02g00001 383 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 354 IPR036279 -
Cme02g00001 383 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Cme02g00001 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cme02g00001 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cme02g00001 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cme02g00001 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 168 188 IPR006084 -
Cme02g00001 383 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Cme02g00001 383 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 377 IPR006084 -
Cme02g00001 383 SMART xpgineu 147 220 IPR006086 GO:0004518
Cme02g00001 383 Gene3D - 10 223 - -
Cme02g00001 383 SMART 53exo3 29 300 IPR002421 GO:0003677
Cme02g00001 383 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Cme02g00001 383 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Cme02g00001 383 PANTHER FLAP ENDONUCLEASE 1 1 377 - -
Cme02g00001 383 MobiDBLite consensus disorder prediction 337 383 - -
Cme02g00001 383 CDD PIN_FEN1 4 333 - -
Cme02g00001 383 Gene3D - 224 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00001 Cme-Chr2:2977 Cme12g01245 Cme-Chr12:20595582 1.16E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00001 K04799 - csv:101204273 724.931