Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g00001 | ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCGCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGTCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCTACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATTGAGCAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGTTTATGCCGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCTGACTGCTCTAAAGCTTATACGTCAACATGGGGCTATAGAGGGTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCTGACGATTGGCCTTACAAAGAGGCTCGACAGCTTTTCAAAGAACCACTAGTATGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACACCAGACGAAGAAGGCTTGTTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAGAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCCTTTTTCAAGCCTGTTACTAATCCTTCAGTATCCATTAAACGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAATGAAGAAATCGAAGTCCGGTGGTAGTAAAAGAAAGTAG | 1152 | 42.53 | MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEQAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKETSEKPTKQAIMKKSKSGGSKRK | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2977 | 19362 | - | MELO3C015225.2.1 | Cme02g00001 | 319890 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g00001 | 383 | MobiDBLite | consensus disorder prediction | 338 | 357 | - | - | |
Cme02g00001 | 383 | Pfam | XPG I-region | 151 | 235 | IPR006086 | GO:0004518 | |
Cme02g00001 | 383 | Hamap | Flap endonuclease 1 [fen]. | 1 | 348 | IPR023426 | GO:0016788 | |
Cme02g00001 | 383 | CDD | H3TH_FEN1-Euk | 223 | 290 | - | - | |
Cme02g00001 | 383 | SMART | xpgn3 | 1 | 108 | IPR006085 | GO:0004518 | |
Cme02g00001 | 383 | SUPERFAMILY | PIN domain-like | 2 | 235 | IPR029060 | - | |
Cme02g00001 | 383 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 220 | 354 | IPR036279 | - | |
Cme02g00001 | 383 | Pfam | XPG N-terminal domain | 1 | 107 | IPR006085 | GO:0004518 | |
Cme02g00001 | 383 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 28 | 42 | IPR006084 | - | |
Cme02g00001 | 383 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 82 | 101 | IPR006084 | - | |
Cme02g00001 | 383 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 146 | 163 | IPR006084 | - | |
Cme02g00001 | 383 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 168 | 188 | IPR006084 | - | |
Cme02g00001 | 383 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 225 | 240 | IPR006084 | - | |
Cme02g00001 | 383 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 1 | 377 | IPR006084 | - | |
Cme02g00001 | 383 | SMART | xpgineu | 147 | 220 | IPR006086 | GO:0004518 | |
Cme02g00001 | 383 | Gene3D | - | 10 | 223 | - | - | |
Cme02g00001 | 383 | SMART | 53exo3 | 29 | 300 | IPR002421 | GO:0003677 | |
Cme02g00001 | 383 | SMART | HhH_4 | 222 | 255 | IPR008918 | GO:0003677|GO:0003824 | |
Cme02g00001 | 383 | ProSitePatterns | XPG protein signature 1. | 80 | 94 | IPR019974 | GO:0016788 | |
Cme02g00001 | 383 | PANTHER | FLAP ENDONUCLEASE 1 | 1 | 377 | - | - | |
Cme02g00001 | 383 | MobiDBLite | consensus disorder prediction | 337 | 383 | - | - | |
Cme02g00001 | 383 | CDD | PIN_FEN1 | 4 | 333 | - | - | |
Cme02g00001 | 383 | Gene3D | - | 224 | 287 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00001 | Cme-Chr2:2977 | Cme12g01245 | Cme-Chr12:20595582 | 1.16E-17 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g00001 | K04799 | - | csv:101204273 | 724.931 |