Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00013 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAACGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGAGAGGGCTGATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTACGATTCTCAACCCGAACTCTGGCCTTCCCCTATTGGCGTCCAACGCGTTCTTTCCCAATTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACGTTTTTGCGACAAAGGATTGCAAAAGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAAAGCCTCACCGCTGCAAAGGGGCTACATGGTCTTAACATGCTTGATTTGAACGATCTTGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAAAGCCTTCTCTTCCACAACCTCAGGCTCAAGCTCAGGCTCAGGCTCCACCGACGACTCAGCCGCAAACTGCAGCGTGGTTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAATAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG 672 44.64 MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQPQAQAQAQAPPTTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 188002 189174 + MELO3C015239.2.1 Cme02g00013 319902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00013 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Cme02g00013 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 182 - -
Cme02g00013 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cme02g00013 223 Coils Coil 87 114 - -
Cme02g00013 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cme02g00013 223 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00013 - - - csv:101203059 409.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00013 Cme-Chr2:188002 Cme12g00862 Cme-Chr12:15403219 3.92E-78 dispersed
Cme02g00013 Cme-Chr2:188002 Cme10g00405 Cme-Chr10:2581053 3.08E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g25 . . . . . . . . Cmo10g01262 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00024 . . . . . . . . . . . . . . Cma10g01184 . Car10g01041 . . . . . . . . . . Cla03g01710 Cam03g1800 Cec03g1848 Cco03g1853 Clacu03g1822 Cmu03g2370 Cre03g2051 . Csa01g02690 . Cme02g00013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40838 PF00319 SRF-TF 5.00E-18 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00013 Cme_Chr02 FPKM 34.939159 38.384441 31.967981 34.495518 32.113781 34.690811 32.202442 48.399189 47.690052 43.762486