Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00062 ATGTCAAGAGTTTCTTTAGCCATTCATCTTTTTATGTTAATCTTTATTCCTGTATTACAAGTTTCCTGCATTGATGTTAATGTTATTTACCCGGATGAGCAAAATAATGTTACACAGTCCATGATTTCTCAGATTTGTGCTGATATCGAAGATCGAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAATCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTATTAATGAAGCTAGACAAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATTGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGGCAGAGCTGGCATGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTCAAAGCATGGCTAAGCGCCGCTCTCAGCAACCAAGATACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCACGGAATGAAACGATGGAGAAAACTAAAAGTTCAGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTTGTGAAATCTCATCCACGTAATGTCCACGTTGATGCTATCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAGCTCCAAGTTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTTTACAAAGAAAATATCGACATGAAGCGAAAGAAAACCAACATAATGTTTATTGGAGATGGTATCGGAGAAACAATAGTGACCGGAAGTCGTAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGATATGACATTTCGCAACACGGCTGGGCCAGAAAACCATCAGGCAGTGGCACTCCGTGTTGACTCTGATCAGTCAGCCTTCTTCCGGTGCAGCTTCGAAGGTCATCAAGACACGCTTTACGTTCACTCCCTCCGCCAATTTTACAGGGAATGCAACATATACGGCACCATAGACTACATTTTCGGCAACGGGGCAGCGGTATTCCAAAAATGCAACATCTACACCAGAGTTCCTCTCCCACTCCAGAAGGTCACAATCACTGCACAAGGTCGAAAATCTCCACACCAGAGTACGGGTTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAACCAACATATCTTGGAAGACCGTGGAAGCTATATTCAAGAACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGTACATTGTGGTATGGAGAGTATAAAAACTATGGACCTGGTGCATCCCTATCAGGTCGAGTCAAATGGCCTGGGTACCATAATATTCAAGACCCTACCATGGCTAGGTTCTTCACCTCCGAGCACTTCATCGACGGTCGATCATGGTTGCCAAAGACAGGTATTAAGTTCACATTGGGATTGAGTAATTAA 1632 42.83 MSRVSLAIHLFMLIFIPVLQVSCIDVNVIYPDEQNNVTQSMISQICADIEDRNSCISNIQLEMGRSVNSNPSSVLSAAIRATINEARQAIESITKFSTFSFSYREEMAIEDCKELLDFSVAELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETMEKTKSSEFPDWMMDSEHKLVKSHPRNVHVDAIVALDGSGDFRSITEAVNEAPSYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGSRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHNIQDPTMARFFTSEHFIDGRSWLPKTGIKFTLGLSN 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 552855 554790 + MELO3C015288.2.1 Cme02g00062 319951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00062 543 ProSitePatterns Pectinesterase signature 1. 264 283 IPR018040 -
Cme02g00062 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 197 IPR035513 -
Cme02g00062 543 PANTHER PECTINESTERASE 10 540 - -
Cme02g00062 543 CDD PMEI-like_4 69 196 - -
Cme02g00062 543 Pfam Pectinesterase 239 526 IPR000070 GO:0030599|GO:0042545
Cme02g00062 543 SMART PMEI_2 37 192 IPR006501 GO:0004857
Cme02g00062 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 197 IPR006501 GO:0004857
Cme02g00062 543 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 10 540 - -
Cme02g00062 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Cme02g00062 543 Gene3D - 234 541 IPR012334 -
Cme02g00062 543 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Cme02g00062 543 SUPERFAMILY Pectin lyase-like 238 540 IPR011050 -
Cme02g00062 543 Pfam Plant invertase/pectin methylesterase inhibitor 41 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00062 Cme-Chr2:552855 Cme06g02315 Cme-Chr6:30555564 3.91E-168 dispersed
Cme06g01136 Cme-Chr6:8752862 Cme02g00062 Cme-Chr2:552855 4.46E-43 dispersed
Cme02g00062 Cme-Chr2:552855 Cme02g00063 Cme-Chr2:557265 3.44E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00062 K01051 - csv:101202977 1096.26