Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00063 ATGGGTTACAAGGATGATGATTCTCAAAACAAGAAACGATACGCCATCATTGGTGTGTCGTCTATGTTACTAGTGGCGATGGTGGTGGCGGTGACAGTTGGTGTTAACCTAAACCAAGATGAGACAAGTGATCCGGCGACTGGAAACAAGTCCCATGAAATATCTTCTTCAATGAAAGCTATTAAAGCCATTTGTCAACCAACTGATTACAAACAAGAATGTATTGCTAGTCTTAAGGCTACTGGTAACAATTCTTCAGATCCACAGGAATTGGTTCAAGCTGGTTTTAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAATCTGTCGACTTGAAACAGCTTGAGAAAGATCCTAGAACCTCAAAAGCCCTTGCTGGTTGTAAAGAGCTCATGGATTTTGCCATCGATGAGCTTAAATACTCCATGAACAAACTCGGAGAGTTTGATATTACTAAACTCGATGAGATGTTGATCGATATTAGGATTTGGCTCAGTGCTACCATTACTTATCAGGAAACTTGCTTGGATGGGTTCCAGAACACAACAGGAAATGCAGCAGAGAAGATGAAGAAGGCATTGAAGACTTCAATGAAGTTGAGTAGCAACGGGTTGGCGATGGTGTCACAGTTCTCGTCGATGTTGACAGAGTTGCAGATTCCAGGGATTAGCCGAAGGCGACTTCTCGAGATTCCAGTTCTTGGGCACGATGATTATCCTGACTGGGCGAATCCCGGGATGCGACGACTCCTAGCTGCAGGGTCAAGAGTGAAGCCCAATGTCGTGGTTGCTAAGGATGGAAGTGGTCAATTCAGGACCATTCAAGCGGCTCTCGACCAAGTTCCAAAGAGGAAGAACAATGCAACTTATGTGATTCATATCAAGGCCGGAGTGTATCAGGAATATCTACAAATTAAAAAGACTGTCACCCACTTGATGCTCATTGGTGATGGCCCCAAAAAGACCATTATCACTGGAAACAAGAACTTTGTTGATGGCACACCCACCTTCAAAACAGCAACCGTTGCTGTGACAGCAGAGCACTTCATGGCAAGAGACATCGGGTTTGAGAACACCGCAGGACCACAAAAGCACCAAGCCGTCGCATTGCGAGTCCAAGCAGACAAAGCCGTTTTCTACAACTGCGAAATGCATGGTTACCAAGACACTCTCTACGTACACACCATGCGTCAATTCTACCGTGATTGCACGGTCTCTGGAACCATCGACTTCATCTTCGGCGACGCGGCCGCCATCTTCCAAGGCTGCACCTTCCTAGTTCGCAAGCCGCTACCAAACCAACAATGCATCGTAACAGCACACGGACGCAAAGAGCGCCGTCAACCATCGGCACTCATCATCCAAAACTGTTCGATCAAGGCCGATAAAGACCTGGCCCCAGTACAAAAGCAATTCCGATCGTTCCTCGGGAGACCGTGGAAGGAATATTCAAGAACAATCATAATGGAATCATACATTGGAGATTTGATTCAGCCAGAAGGGTGGTTGCCATGGGCAGGGGATTGGGGATTAAAGACATGTTTTTACACAGAGTACAATAATTATGGACCAGGTTCTAATAAATCAAAGAGGGTGAAATGGAGAGGGATTAAGACAATTACACCACAACATGCTTTGGATTTTACTGCTGGCCGGTTCGTTATGGGGGATAGATGGATTAAGCCCACCGGAGTTCCTTATGTTTCTGGAATGACCAGGACCGGCGGTGCTGCGGCGGCGGCTCATTGA 1752 46.35 MGYKDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETSDPATGNKSHEISSSMKAIKAICQPTDYKQECIASLKATGNNSSDPQELVQAGFKAAMKLIQAAANKSVDLKQLEKDPRTSKALAGCKELMDFAIDELKYSMNKLGEFDITKLDEMLIDIRIWLSATITYQETCLDGFQNTTGNAAEKMKKALKTSMKLSSNGLAMVSQFSSMLTELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGSRVKPNVVVAKDGSGQFRTIQAALDQVPKRKNNATYVIHIKAGVYQEYLQIKKTVTHLMLIGDGPKKTIITGNKNFVDGTPTFKTATVAVTAEHFMARDIGFENTAGPQKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTVSGTIDFIFGDAAAIFQGCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSIKADKDLAPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLKTCFYTEYNNYGPGSNKSKRVKWRGIKTITPQHALDFTAGRFVMGDRWIKPTGVPYVSGMTRTGGAAAAAH 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 557265 559811 + MELO3C015289.2.1 Cme02g00063 319952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00063 583 Gene3D - 255 572 IPR012334 -
Cme02g00063 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 212 IPR035513 -
Cme02g00063 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 211 IPR006501 GO:0004857
Cme02g00063 583 PANTHER PECTINESTERASE 16 574 - -
Cme02g00063 583 Pfam Pectinesterase 261 558 IPR000070 GO:0030599|GO:0042545
Cme02g00063 583 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Cme02g00063 583 CDD PMEI-like_3 63 214 - -
Cme02g00063 583 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Cme02g00063 583 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Cme02g00063 583 PANTHER PECTINESTERASE 16 574 - -
Cme02g00063 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Cme02g00063 583 SMART PMEI_2 56 208 IPR006501 GO:0004857
Cme02g00063 583 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00063 Cme-Chr2:557265 Cme11g02031 Cme-Chr11:28124390 0 dispersed
Cme12g01093 Cme-Chr12:18847758 Cme02g00063 Cme-Chr2:557265 5.26E-142 dispersed
Cme02g00062 Cme-Chr2:552855 Cme02g00063 Cme-Chr2:557265 3.44E-131 tandem
Cme10g01634 Cme-Chr10:22079261 Cme02g00063 Cme-Chr2:557265 3.69E-173 transposed
Cme02g00063 Cme-Chr2:557265 Cme06g00752 Cme-Chr6:4959491 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00063 K01051 - csv:101207393 1092.41