Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00092 ATGTCCAAAATCTCAGGGTGTTCTGATGATGGTGGGAGCTTTGTGTCTGAAGCTGAGAAGTTAGAGAATCAGTTCATTAATGGAAGCTTTGAATCTCATCATCAACAACAACAACAACAACAACCTCAGCTTGTAGTTCCCAAGAAGAAGAGGAACTTGCCAGGAACTCCAGTTCCGGATGCGGAGGTGGTAGCATTATCTCCGGAAACCCTAATGGCGACGAATCGATTCATGTGTGAAATATGTAACAAAGGGTTTCAAAGAGATCAGAACTTGCAACTACACAGAAGAGGGCATAACCTACCATGGAAGTTGAAGCAGAGGACGAGCGGGAGCGAGACGAAGAGGAAGGTGTACGTGTGCCCGGAAGCGTCGTGCGTCCACCACGACCCAGGTAGGGCACTGGGAGACCTGACGGGAATCAAGAAACACTTCAGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCGAAGAAATATGCTGTTCAATCTGACTTGAAAGCTCATACCAAAGCATGTGGATCCAAGGAATACAAATGCGACTGTGGCACTATCTTTTCCAGAAGAGATAGCTTTATCACCCATAGAGCATTTTGTGATGCCTTAGCAGAAGAACACAACAAATTACTCATTGCTCATCAAGGATCAACAACAACAATGGCAGCTGCAGCTTCTTCCACAGCCATTAACAATGGACCTTCCTTTCAACCCCAACCTCTTTCTCATCTTCTCTCTCGACCCAGCATCCTTCCCCTGCCATTAACAACGCTGCCTCACGACCTTATGCCCATTCCTCCAAAGCCCTTAAACCTATCTGCAGGATCCATGTTTTCATCTTCCATTTCCAACAACTCCACCACCACCACCACCACCTTTCAAAACGACAACCATCTCTTTCCCTCCTCCTCCGCTCTCATGTCCGCTACCGCTCTGTTGCAGAAGGCGGCGCAGATGGGAGCTGCTGTTAGCAGCGGTGGAAACTCCAGTGCTCCTTGTTTCAACTCATCCATGATCCATGAGAAGAAGGGTTTTGTTACAACGATGGCTCCTTCTTCCTTTTGTGGGCTATTGGCCACCAACTGTTTGCAAAGGTGTCCACAAGAAAATATGTTATCCCAACTACCTTCAAAGGGAAAAGCAATGGAGATGGAGATGATGATCGTCAACAACGACATTCCGATGATGAATGGAGTGTTCGATCAGCCGTCGTCGCTCGTGGAAGCGGCTAGGAAGAAGATGACACTAGATTTGTTGGGGGATGAGGGAGGGAACAATAAAGGGATGAAATTTCAAGCACAAGATCAAAGTAGTGTGGGCTTATTGGAGGGTTTGTGGAGAATATGA 1353 47.01 MSKISGCSDDGGSFVSEAEKLENQFINGSFESHHQQQQQQQPQLVVPKKKRNLPGTPVPDAEVVALSPETLMATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRKVYVCPEASCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHTKACGSKEYKCDCGTIFSRRDSFITHRAFCDALAEEHNKLLIAHQGSTTTMAAAASSTAINNGPSFQPQPLSHLLSRPSILPLPLTTLPHDLMPIPPKPLNLSAGSMFSSSISNNSTTTTTTFQNDNHLFPSSSALMSATALLQKAAQMGAAVSSGGNSSAPCFNSSMIHEKKGFVTTMAPSSFCGLLATNCLQRCPQENMLSQLPSKGKAMEMEMMIVNNDIPMMNGVFDQPSSLVEAARKKMTLDLLGDEGGNNKGMKFQAQDQSSVGLLEGLWRI 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 707240 712363 - MELO3C015315.2.1 Cme02g00092 319981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00092 450 Gene3D Classic Zinc Finger 111 202 - -
Cme02g00092 450 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Cme02g00092 450 MobiDBLite consensus disorder prediction 25 60 - -
Cme02g00092 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 182 IPR013087 -
Cme02g00092 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 375 - -
Cme02g00092 450 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 23 375 - -
Cme02g00092 450 SUPERFAMILY beta-beta-alpha zinc fingers 76 174 IPR036236 -
Cme02g00092 450 MobiDBLite consensus disorder prediction 25 46 - -
Cme02g00092 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Cme02g00092 450 Pfam Zinc-finger double-stranded RNA-binding 77 99 IPR022755 -
Cme02g00092 450 SMART c2h2final6 77 99 IPR013087 -
Cme02g00092 450 SMART c2h2final6 154 174 IPR013087 -
Cme02g00092 450 SMART c2h2final6 119 149 IPR013087 -
Cme02g00092 450 Gene3D Classic Zinc Finger 73 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02350 Cme-Chr1:31852549 Cme02g00092 Cme-Chr2:707240 1.85E-106 dispersed
Cme02g00092 Cme-Chr2:707240 Cme11g00875 Cme-Chr11:11738322 1.64E-107 dispersed
Cme12g00482 Cme-Chr12:8275347 Cme02g00092 Cme-Chr2:707240 2.96E-23 dispersed
Cme02g00092 Cme-Chr2:707240 Cme01g00481 Cme-Chr1:3468044 3.32E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40841 PF12171 zf-C2H2_jaz 5.50E-05 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00092 - - cmo:103492168 820.461