Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g00095 | ATGGAAAACCATAATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAGATGTCACTATGAGAATAGAAGAACTCTTAATGGTGATGATATTTGTTGGGCCTTCGCTTCTTCTGGTTTAGATAATTATGCTGAGGTTTTTGCTAAGTACTTGCATAAGTATAGAGAAGTTGAAAGAATCAAGGTTGATGAATATAAATGCAAAATTACTCAACGACTACTACCACAAGATGATGATGATAAAGAACAAGAAGATAATCATAGATCTATTGATGGAGAGATCGGGCTTATGTTCGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTGCCTTTGAAACTGAACTACGTGGTGTCATTCCGGTTGTTAAAGCATCTATCGGTGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGATCAAGAACTTCAGCACTTGAGGAACAGTTTGCCTGACCAAGTTGTTATTCAACGTATACAAGAGAGACTGTCTGCTTTGGGAAACACGATTTCTTGTAATGACCACGTTGCTCTCGCACATACCGATCTTGACCGGGAAACTGAAGACCTCATCGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTTCTCGTTGGAAGCTACTCTAGTTTTACGAATAGAGGAGGCTTGGTTCATCCACATACATCCGTTGAAGATTTGGACGAGCTATCAACCCTTCTTCAGGTCCCGTTAGTCGCTGGCACCGTGAATCGTGGAAGTGAAGTGATTGCGGCTGGATTAACAGCAAATGACTGGACTGCATTTTGTGGTTCGGACACCACTGCCACCGAGTTATCGGTCATCGAGAATGTTTTCAAATTGAGGGAGGCTCAACCAAGCTCCATTGTCGAAGAAATGAGGAAGTCATTAATTGACAGTTATGTGTGA | 1134 | 41.89 | MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFETELRGVIPVVKASIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVIQRIQERLSALGNTISCNDHVALAHTDLDRETEDLIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSLIDSYV | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 720962 | 725066 | + | MELO3C015319.2.1 | Cme02g00095 | 319984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g00095 | 377 | CDD | IF6 | 139 | 355 | IPR002769 | GO:0042256|GO:0043022 | |
Cme02g00095 | 377 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 12 | 75 | IPR003958 | - | |
Cme02g00095 | 377 | Hamap | Translation initiation factor 6 [eif6]. | 122 | 377 | IPR002769 | GO:0042256|GO:0043022 | |
Cme02g00095 | 377 | SMART | eIF6neu2 | 135 | 336 | IPR002769 | GO:0042256|GO:0043022 | |
Cme02g00095 | 377 | Gene3D | Histone, subunit A | 1 | 133 | IPR009072 | GO:0046982 | |
Cme02g00095 | 377 | Pfam | eIF-6 family | 138 | 335 | IPR002769 | GO:0042256|GO:0043022 | |
Cme02g00095 | 377 | Gene3D | - | 135 | 357 | - | - | |
Cme02g00095 | 377 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Cme02g00095 | 377 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Cme02g00095 | 377 | PRINTS | CCAAT-binding transcription factor subunit A signature | 40 | 58 | - | - | |
Cme02g00095 | 377 | SUPERFAMILY | Pentein | 138 | 356 | - | - | |
Cme02g00095 | 377 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 137 | 377 | - | - | |
Cme02g00095 | 377 | SUPERFAMILY | Histone-fold | 12 | 132 | IPR009072 | GO:0046982 | |
Cme02g00095 | 377 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 137 | 377 | IPR002769 | GO:0042256|GO:0043022 | |
Cme02g00095 | 377 | TIGRFAM | eIF-6: putative translation initiation factor eIF-6 | 138 | 356 | IPR002769 | GO:0042256|GO:0043022 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00095 | Cme-Chr2:720962 | Cme11g00028 | Cme-Chr11:304729 | 5.33E-101 | dispersed | |
Cme02g00095 | Cme-Chr2:720962 | Cme02g00096 | Cme-Chr2:726817 | 1.16E-44 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40842 | PF01912 | eIF-6 | 4.10E-77 | CL0197 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g00095 | K03264 | - | csv:101207707 | 464.536 |