Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00095 ATGGAAAACCATAATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTAACAAGTGAAGCAGCACAAAGATGTCACTATGAGAATAGAAGAACTCTTAATGGTGATGATATTTGTTGGGCCTTCGCTTCTTCTGGTTTAGATAATTATGCTGAGGTTTTTGCTAAGTACTTGCATAAGTATAGAGAAGTTGAAAGAATCAAGGTTGATGAATATAAATGCAAAATTACTCAACGACTACTACCACAAGATGATGATGATAAAGAACAAGAAGATAATCATAGATCTATTGATGGAGAGATCGGGCTTATGTTCGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTGCCTTTGAAACTGAACTACGTGGTGTCATTCCGGTTGTTAAAGCATCTATCGGTGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGATCAAGAACTTCAGCACTTGAGGAACAGTTTGCCTGACCAAGTTGTTATTCAACGTATACAAGAGAGACTGTCTGCTTTGGGAAACACGATTTCTTGTAATGACCACGTTGCTCTCGCACATACCGATCTTGACCGGGAAACTGAAGACCTCATCGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTTCTCGTTGGAAGCTACTCTAGTTTTACGAATAGAGGAGGCTTGGTTCATCCACATACATCCGTTGAAGATTTGGACGAGCTATCAACCCTTCTTCAGGTCCCGTTAGTCGCTGGCACCGTGAATCGTGGAAGTGAAGTGATTGCGGCTGGATTAACAGCAAATGACTGGACTGCATTTTGTGGTTCGGACACCACTGCCACCGAGTTATCGGTCATCGAGAATGTTTTCAAATTGAGGGAGGCTCAACCAAGCTCCATTGTCGAAGAAATGAGGAAGTCATTAATTGACAGTTATGTGTGA 1134 41.89 MENHNNGDEFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVERIKVDEYKCKITQRLLPQDDDDKEQEDNHRSIDGEIGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFETELRGVIPVVKASIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVIQRIQERLSALGNTISCNDHVALAHTDLDRETEDLIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSLIDSYV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 720962 725066 + MELO3C015319.2.1 Cme02g00095 319984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00095 377 CDD IF6 139 355 IPR002769 GO:0042256|GO:0043022
Cme02g00095 377 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 12 75 IPR003958 -
Cme02g00095 377 Hamap Translation initiation factor 6 [eif6]. 122 377 IPR002769 GO:0042256|GO:0043022
Cme02g00095 377 SMART eIF6neu2 135 336 IPR002769 GO:0042256|GO:0043022
Cme02g00095 377 Gene3D Histone, subunit A 1 133 IPR009072 GO:0046982
Cme02g00095 377 Pfam eIF-6 family 138 335 IPR002769 GO:0042256|GO:0043022
Cme02g00095 377 Gene3D - 135 357 - -
Cme02g00095 377 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Cme02g00095 377 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Cme02g00095 377 PRINTS CCAAT-binding transcription factor subunit A signature 40 58 - -
Cme02g00095 377 SUPERFAMILY Pentein 138 356 - -
Cme02g00095 377 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 137 377 - -
Cme02g00095 377 SUPERFAMILY Histone-fold 12 132 IPR009072 GO:0046982
Cme02g00095 377 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 137 377 IPR002769 GO:0042256|GO:0043022
Cme02g00095 377 TIGRFAM eIF-6: putative translation initiation factor eIF-6 138 356 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00095 Cme-Chr2:720962 Cme11g00028 Cme-Chr11:304729 5.33E-101 dispersed
Cme02g00095 Cme-Chr2:720962 Cme02g00096 Cme-Chr2:726817 1.16E-44 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40842 PF01912 eIF-6 4.10E-77 CL0197 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00095 K03264 - csv:101207707 464.536