Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00106 ATGGATCAGCAAGGGCATGGCCAGCCATCCATGGGAGCGGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGCCTGTAGGCCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCAGACGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAAGATCTGAAAGATGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTATATGCCGTCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCCCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAA 777 46.98 MDQQGHGQPSMGAVGSGGQIAYGSNLYHPNQMPVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 787039 792886 - MELO3C015332.2.1 Cme02g00106 319995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00106 258 Gene3D Histone, subunit A 64 180 IPR009072 GO:0046982
Cme02g00106 258 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 257 - -
Cme02g00106 258 SUPERFAMILY Histone-fold 69 174 IPR009072 GO:0046982
Cme02g00106 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 257 - -
Cme02g00106 258 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 102 165 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00106 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 456.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00287 Cme-Chr1:2161775 Cme02g00106 Cme-Chr2:787039 2.12E-82 dispersed
Cme02g00106 Cme-Chr2:787039 Cme02g02068 Cme-Chr2:26656121 4.30E-69 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.3e-88 321.2
Cme02g00106 . 81 248 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Cme01g00287 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.7e-53 204.1
Cme02g00106 . 1 258 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.0 5.1e-57 218.0
Cme01g00287 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.6e-49 191.0
Cme02g02068 . 96 195 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.1e-43 171.0
Cme02g00106 . 22 248 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 5.4e-61 231.1
Cme01g00287 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.1e-52 202.6
Cme02g02068 . 96 255 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cme02g02068 . 96 254 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.5e-38 155.2
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.5e-80 295.0
Cme02g00106 . 81 249 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.5e-50 194.5
Cme01g00287 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cme01g00287 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.2e-64 242.3
Cme02g02068 . 97 220 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cme02g00106 . 53 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.8e-50 194.1
Cme03g01414 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.0 5.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40844 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00106 Cme_Chr02 FPKM 10.011495 10.874429 0.0 0.0 6.296176 8.4154 6.224949 0.086398 0.0 0.0