Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00106 ATGGATCAGCAAGGGCATGGCCAGCCATCCATGGGAGCGGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGCCTGTAGGCCCAACTTCGGGATCTGTCGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCAGACGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAAGATCTGAAAGATGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTATATGCCGTCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCCCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAA 777 46.98 MDQQGHGQPSMGAVGSGGQIAYGSNLYHPNQMPVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 787039 792886 - MELO3C015332.2.1 Cme02g00106 319995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00106 258 Gene3D Histone, subunit A 64 180 IPR009072 GO:0046982
Cme02g00106 258 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 257 - -
Cme02g00106 258 SUPERFAMILY Histone-fold 69 174 IPR009072 GO:0046982
Cme02g00106 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 257 - -
Cme02g00106 258 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 102 165 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00287 Cme-Chr1:2161775 Cme02g00106 Cme-Chr2:787039 2.12E-82 dispersed
Cme02g00106 Cme-Chr2:787039 Cme02g02068 Cme-Chr2:26656121 4.30E-69 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40844 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00106 K08066 - csv:101209664 456.832