Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00114 ATGGCTCTAGAGGCAGTTGTTTTCCCACAAGACCCTTTTGTGTATAAAGATCATTTGTTCAATTTGGTGAATTCTTCTTCAAGCTGCCTCAACTTCATTGATCATCATCAAGATAATGACTTTTATTATCTTCCCGACCTATCAGTACAGAACAACTCTCCAATATTTTTGGACGATGATCATTATAATTTTAGTGACGAATTATCAGGACGGGTTGATTTGACGACGTTGATGACGAGCGAGATGAAGGACGGAGGAGGGAGCGAGCGGTTGGAGAGACGGCGGCAACGGCGGAGGCGAGGGAAAACAGAAAAGAACAAGGAGGAAATAGAGAACCAAAGAATGACACACATTGTTGTGGAGAGGAATAGAAGAAAGCAAATGAATGAGTATCTCTCTATTCTTAGATCATTAATGCCTCATTCCTATGTTCAAAGGGGTGACCAAGCCTCAATCATAGGTGGTGCTATCAACTTTGTTAAGGAACTTGAACAACAAGTACATTTACTTAGTGCTCAAACATATCATGTAAACCCTTTTTTTCCTTCTCATGTTCCACCAAATAACAACATTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCTTTCTCTCAATATCCTTCCTTCACTTTCCCGTCTTCTTCTTCTCCGTCCTCGTCGTCTTCTTCCTTTTCTCTCGACGACAATAATAACGCTTCAACCGTTGTTGCCATGACGACATCTAACAACTTGAACAACATGAACAACCTGAACAGTCTGATTCAGACTTCTATTGGCGATATTGAAGTCTCTATGGTTGACTCCCATGCAAACCTTAAGATAAGATGTAAAAAGCTTCCTAAACAGCTTCTTAAGATTGTTTCTGGCTTGCATTCCTTGCATCTCAGTGTTCTTCATCTCAATGTCTCCACTGCCCATCAATTTGTCCTCTACTCTTTCAGTCTCAAGGTTGAGGAAGACTGTGGGCTTTCTTCAGTGGATGAGATTGCAAATGGTGTGTATCAATTGCTTTGCAGAATTCAAGAAGAGGCATTCTCCAACTGA 1068 40.45 MALEAVVFPQDPFVYKDHLFNLVNSSSSCLNFIDHHQDNDFYYLPDLSVQNNSPIFLDDDHYNFSDELSGRVDLTTLMTSEMKDGGGSERLERRRQRRRRGKTEKNKEEIENQRMTHIVVERNRRKQMNEYLSILRSLMPHSYVQRGDQASIIGGAINFVKELEQQVHLLSAQTYHVNPFFPSHVPPNNNIISSSSSSSSSSSSSSSSFPFSQYPSFTFPSSSSPSSSSSSFSLDDNNNASTVVAMTTSNNLNNMNNLNSLIQTSIGDIEVSMVDSHANLKIRCKKLPKQLLKIVSGLHSLHLSVLHLNVSTAHQFVLYSFSLKVEEDCGLSSVDEIANGVYQLLCRIQEEAFSN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 871147 874751 + MELO3C015341.2.1 Cme02g00114 320003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00114 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Cme02g00114 355 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 354 - -
Cme02g00114 355 Coils Coil 93 113 - -
Cme02g00114 355 MobiDBLite consensus disorder prediction 81 110 - -
Cme02g00114 355 Pfam Helix-loop-helix DNA-binding domain 113 164 IPR011598 GO:0046983
Cme02g00114 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 179 IPR036638 GO:0046983
Cme02g00114 355 SMART finulus 118 169 IPR011598 GO:0046983
Cme02g00114 355 Gene3D - 102 178 IPR036638 GO:0046983
Cme02g00114 355 PANTHER MAX DIMERIZATION, MAD 1 354 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00114 Cme05g01680 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00114 Cme-Chr2:871147 Cme05g01680 Cme-Chr5:25832469 1.46E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40845 PF00010 HLH 5.70E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00114 - - csv:101210652 518.464