Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00158 AAACCAAAAAGAAAACACACAAACACCAAAGCTCCATTTTCCATTACAATTTCTCTCCTCAAGAACAACTTTCTTCAAAATCGCTTCTCCCCATCCATTATCGCCTTTCCGATTCTGCCACCCATTTCTCCGACACCTTCTCTCTTCCCCAAAAACAAAAAACCCACTTTCATTTTGTTAATCTCTTCAATTTTCATGGCCGGAATCCCCTCTGAGGGGTTGGGCGATGATTTTTTCGAGCAGATGCTTGCTGTTCCACCGTCTTACGGCGGCGCTGGTGGCGGAGACATGGTTTCTTTGCCTATGGGACTTCAACTTGGGTCCGGTGGTGGCGGCGGCGGTAACGGCGGAGGAATGGGTATGCCGTTAGGGTTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATTTAGAGAAGAGGTTGATGGAGGGCATAATAGTAATTCTAATAATAATGCTTCTTCCTCTTCAACTGCTTCTTCCGGAATCACTGAGAGAGATTCTTCAATGCAGCATATGACAAACTTGTTTCCGACCTTTGGACATTTGCAAACTCAACAACTCCGACCACCGCCGCCGTTGCATCTCCACCAGCCCTTTCACAATCAGACAAATACTGGGACGGTTGCTGCTGTACCACAACCACCTCAAGTTCGTCCTAGAGTTCGAGCAAGACGAGGGCAAGCGACTGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAAGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTACGTAAAGTTTCTTAGACTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGCGGGGCTGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCGCTATCATCAGTCGAGGGAGAAGGCATTGAGAGTGGTAACAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGCACAGAGCAACAAGTAGCCAAATTAATGGAAGAAGATGTGGGAGCTGCCATGCAGTTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAG 1152 46.53 KPKRKHTNTKAPFSITISLLKNNFLQNRFSPSIIAFPILPPISPTPSLFPKNKKPTFILLISSIFMAGIPSEGLGDDFFEQMLAVPPSYGGAGGGDMVSLPMGLQLGSGGGGGGNGGGMGMPLGLNLEQGFLRQERFREEVDGGHNSNSNNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTNTGTVAAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1175971 1183690 + MELO3C015379.2.1 Cme02g00158 320047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00158 383 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 72 372 - -
Cme02g00158 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 287 IPR036638 GO:0046983
Cme02g00158 383 MobiDBLite consensus disorder prediction 144 165 - -
Cme02g00158 383 MobiDBLite consensus disorder prediction 141 165 - -
Cme02g00158 383 SMART finulus 234 283 IPR011598 GO:0046983
Cme02g00158 383 Gene3D - 221 278 IPR036638 GO:0046983
Cme02g00158 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 372 - -
Cme02g00158 383 MobiDBLite consensus disorder prediction 207 232 - -
Cme02g00158 383 Pfam Helix-loop-helix DNA-binding domain 233 277 IPR011598 GO:0046983
Cme02g00158 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02003 Cme-Chr1:28563473 Cme02g00158 Cme-Chr2:1175971 8.29E-99 dispersed
Cme02g00158 Cme-Chr2:1175971 Cme02g01076 Cme-Chr2:15788112 2.66E-62 dispersed
Cme05g00357 Cme-Chr5:2842270 Cme02g00158 Cme-Chr2:1175971 1.53E-11 dispersed
Cme05g01832 Cme-Chr5:27182868 Cme02g00158 Cme-Chr2:1175971 5.99E-13 dispersed
Cme02g00158 Cme-Chr2:1175971 Cme07g00258 Cme-Chr7:1678327 6.92E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40849 PF00010 HLH 9.20E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00158 - - csv:101216855 513.457