Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00166 ATGAAACACATTTTCAAGAAGTTTCATATAGGAAGCAATCACGAGCCGAATCGGTCCAACGAGAATCCGTCGCCTGTAGCAGCAGTGTCGTCTTCACCATGTGTTTCTGATAATCGTCCTGCAACTGCTCTGGGACAGACTTCCGGTAACTCTCCCCCCAGTCCTTCATCGTCGCCGTCGCTGGCAACAACTTCTCCAGGGGGTGGAAGTGTAACCCAGGTTTCGGTGCCCAATCGGTCTGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCATCGAATTCGGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACACTTTTGAGCTTGGGAAATCATCGGATTGATTCTACTTCCAGGGACCAGGGAGATGCTGCCGAGGTGCTCTCGAGACAATATTGGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGCCAATGGGTTTTATGATGTCCTTTCTACGGATTCAGCAGTCCAAGGAAAAATTCCATCGCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTGATGGTCAATATGACTGTTGATCCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGGACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCCGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGACCCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATCGGTTCCATTAATATTGGCCTCTCAAGACATCGTGCATTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTATAAAATTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGGAGCTCCTGGAACACTTCTACCAGCAGACACAGTTAATGCAAAGGACACTACTAACTTTAAGCCTTACAACCCTAAAGTAAGCAGAATTCCTTCTCTTCACCACTCCAATGATGTTGGAATTTCTTCTGCGAGGCCAACATTGGGACATGAGGAAGGCAGCAGTCAGAACTTTGGAGCAGAGGCCATCTCACTGATGGATGGGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCATCAAGCTCAGGTACTGGGACTTCTCGACACAAAGGGGCCCATTTTGGTGATGGTAATGTTCGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGTTCCGAGGATTCCAAAAATCTTTTTGCCGATCTTAATCCTTTCCAAATAAGAGGAACTGGAAAAAGTTTCATGCCTAACAAGTTCTCAGATAATAAAAGTGACGAGCTCCAGAAACCTACTATTGGGCATCCTCCTGTACCATTATGGAAAAATCGGGTTGCTTTTAATGCAGTTCCCAATAAAAATGAGTATGATTATATGGAGGGCCGTTTTCCAAGAATTAGCCGTGCACCTAATGATCACAATATGGCATTATCTTCTTCCAACTCGACTGTCTCTGAAAATGTTAAACCTGGAGGTTCAGGAACATCTAATGACTTGATTGCATCGGTTAGAAGTGCTGAAGTTGGAAGTTCTTCATCAAATATGAACACACAGCTGGCATCTTCAATGATTGAGCCTAATATTTTGCCCTTGATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGACGAAAAGGTAGATGCTGTTGATGGACGAGACAATTTAATCAGATTTGATAACCGTAGAAAGTTCACATACGATAGATCTGTTGGAACCAACTTGATATTGAAGGATCCGGGAAGTCCTAGCCTGTTGGTCAATCCAAGTTCAAATAGGTTTGAGCAAGTTTATGACGATGTGGACGTAGGTCAATGTGAAATCCAATGGGAGGACCTCGTTATTGGTGAAAGGATCGGACTAGGTTCATATGGAGAAGTCTACCATGCTGATTGGAATGACACCGAGGTTGCTGTGAAGAAGTTCTTAGACCAGGATTTTTCTGGTGCTGCTTTAGCTGAGTTCAAAAGAGAAGTATTGATAATGCGGCAGCTGCGTCATCCGAACATTGTTCTTTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCGAGAGGAAGCTTGTACCGGATCATTCACCGTCCAAATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTGGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTAATCCAACAATTGTTCACCGAGATCTGAAGTCACCAAATCTTTTGGTTGATAAGAACTGGAATGTGAAGCTGCGGAATCCTGGGGGTGCGTCTGTTTCTACTTATGCTTTCTTTGGTTTGGTGTCAGATTTTGGGTTGTCACGCCTAAAGCACAATACATTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTTCGGAATGAGCCTTCAAATGAGAATGATCCAAACCTGCGCCCCTCATTCTCACAATTAGCCAACATTCTGAAGCCACTGCAGCGGCTCGTCCTGCCACCACATTCGGACCAGCCAAGTTCGTCAGTACTGCAAGAGATCTCTGTAAATTCTACACCTTAG 2712 44.43 MKHIFKKFHIGSNHEPNRSNENPSPVAAVSSSPCVSDNRPATALGQTSGNSPPSPSSSPSLATTSPGGGSVTQVSVPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTSRDQGDAAEVLSRQYWEYNLLDYEEKVANGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDPHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMGAPGTLLPADTVNAKDTTNFKPYNPKVSRIPSLHHSNDVGISSARPTLGHEEGSSQNFGAEAISLMDGKLSYGRTESVPSSSGTGTSRHKGAHFGDGNVRLNVNVVPFGQSSEDSKNLFADLNPFQIRGTGKSFMPNKFSDNKSDELQKPTIGHPPVPLWKNRVAFNAVPNKNEYDYMEGRFPRISRAPNDHNMALSSSNSTVSENVKPGGSGTSNDLIASVRSAEVGSSSSNMNTQLASSMIEPNILPLIDEQNRKSNGEHSGNTDMEDEKVDAVDGRDNLIRFDNRRKFTYDRSVGTNLILKDPGSPSLLVNPSSNRFEQVYDDVDVGQCEIQWEDLVIGERIGLGSYGEVYHADWNDTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPNCQIDEKRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKLRNPGGASVSTYAFFGLVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNENDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISVNSTP 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1237800 1248676 - MELO3C015389.2.1 Cme02g00166 320055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00166 903 MobiDBLite consensus disorder prediction 884 903 - -
Cme02g00166 903 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Cme02g00166 903 Gene3D Phosphorylase Kinase; domain 1 657 741 - -
Cme02g00166 903 SUPERFAMILY Protein kinase-like (PK-like) 652 854 IPR011009 -
Cme02g00166 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Cme02g00166 903 MobiDBLite consensus disorder prediction 882 903 - -
Cme02g00166 903 Pfam Ethylene-responsive protein kinase Le-CTR1 137 331 - -
Cme02g00166 903 PANTHER SERINE-THREONINE PROTEIN KINASE 73 858 - -
Cme02g00166 903 PANTHER SERINE-THREONINE PROTEIN KINASE 859 895 - -
Cme02g00166 903 SMART serkin_6 664 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00166 903 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 73 858 - -
Cme02g00166 903 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 859 895 - -
Cme02g00166 903 MobiDBLite consensus disorder prediction 15 76 - -
Cme02g00166 903 Pfam Protein tyrosine and serine/threonine kinase 665 854 IPR001245 GO:0004672|GO:0006468
Cme02g00166 903 MobiDBLite consensus disorder prediction 399 413 - -
Cme02g00166 903 MobiDBLite consensus disorder prediction 398 420 - -
Cme02g00166 903 MobiDBLite consensus disorder prediction 1 76 - -
Cme02g00166 903 CDD STKc_MAP3K-like 670 858 - -
Cme02g00166 903 ProSiteProfiles Protein kinase domain profile. 664 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00166 903 Gene3D Transferase(Phosphotransferase) domain 1 743 860 - -
Cme02g00166 903 MobiDBLite consensus disorder prediction 519 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00166 Cme-Chr2:1237800 Cme07g00228 Cme-Chr7:1500074 1.60E-70 dispersed
Cme02g00166 Cme-Chr2:1237800 Cme04g02435 Cme-Chr4:30989682 4.74E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64663 PF07714 PK_Tyr_Ser-Thr 1.30E-34 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00166 - - csv:101218274 1564.28