Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00185 ATGACGACATCTCTTTCTTCTCTTTCTCTTTTCTTTTTTCTGAAACCCATTTCCTTCTTCCTCCTCTTCCTCTGTTTCCACCATGTCAATTCCCAGCTTTACCAACGAGAACACTCTGTTTTGCTCCGAATCAATCGGTTCTGGAAAAACCAAGCACCGATCACCCATTGGCTTTCCTCAAATGTTTCTCATTGTTCATGGCCGGAGGTTCAATGCACCAACAACTCCGTCACTGCTCTGTTTTTCTCTTTCTACAATTTGAACGGAACCATCCCCTCTTTCATTTGCGATCTCAAAAATCTCACCCACCTTGATTTTCAACTCAATTTCTTCACCGGTGGCTTTCCCACCGCTCTTTACAGTTGTTCGAATCTCAATTACCTCGACCTCTCGCAGAATTTACTCACCGGGCCGATTCCTGATGATGTCGACCGCTTGTCTCGCCTCCAGTTTCTTAGTCTCGGTGGAAACAGCTTCTCCGGCGAAATTCCGGTATCGATTTCTCGCTTGTCTGAACTCCGGTTCCTTCATCTTTATGTTAATCAATTTAATGGGACTTACCCATCTGAGATTGGTAACTTGTTGAATTTGGAAGAATTGTTAATGGCTTACAATTTGCAACTGGAACCGGCTGAATTGCCTTCCACTTTTGCGCAATTGAGCAAATTGACGTATTTGTGGATGGCAAAGTCGAACGTCATCGGTGAAATTCCTGAATGGATTGGAAATTTGACGGCTCTCGTGAAATTGGATTTGTCGAGGAACAATTTGATTGGGAAAATACCCAATAGTTTGTTTACGTTGAAGAACCTCAGTATTGTTTATCTGTTCAAGAACAATCTCTCAGGAGAAATTCCTCAACGGATTGATTCTAAAGGCATCATCGAATACGACTTGTCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGCGATTTACAGAACCTGACGGCTCTGCTTCTGTTTACAAATCATTTATATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTATTAACGGACGTAAGATTATTCGACAACAATTTAAACGGTACTCTGCCGCCAGATTTCGGCCGGAATTTGATCCTCGAAGGTTTTCAAGTGAATTCCAATAAATTCACCGGAAGCTTACCGGAGCATTTGTGCTCCGGTGGTAAACTGAAAGGATTGATTGCTTATGAGAATAATCTTAGTGGCGAGTTGCCAAAATCTCTTGGGAATTGCGATAGCTTGATTATTGTCGATGTTCACGAGAACAATATTTCAGGGGAAATTCCGGCGGGTTTATGGACTGCTCTGAATTTGACTTATGCAGTGATGAACAACAATTCTTTCACCGGTGATTTTCCTCTGACGGTTTCGAAGAATCTTGCGAGATTCCAAATCAGTAATAACAAAATTTCAGGTGAAATTCCGTCGGAGTTATCTTCGTTTTGGAATTTGACCGAGTTTGAAGCAAGTAACAATCTGTTGACAGGAAATATTCCTGAAGAATTAACCGCTCTTTCAAAGTTGTACAAGCTTTCGCTCGATGGAAATCAACTAAATGGGGAGCTTCCAAAGAAAATCTTTTCATGGAAATCATTGCAGCGTCTTAAACTGAATGGAAATCGTCTTTCCGGTGAGATACCGGATGAACTTGGCTACTTACCGAACCTTAATGATCTTGATCTCTCGGAGAATCAACTTTCTGGGTCGATTCCGATTTCGTTGGGGAAGTTGGCACTGAATTTTCTTAACCTGTCTTCAAATTTTCTGTCCGGGGTTATCCCATCTGCATTAGAAAATGCAATCTTTGCAAGAAGCTTTTTGAACAATCCGAGTCTTTGCTCAAACAATGCAGTTCTAAATCTCGATGGCTGTAGTTTGAGAACTCAGAATTCGAGGAAGATTTCGTCGCAGCATCTTGCGCTGATCGTAAGCTTGGGCGTAATTGTAGTAATACTCTTTGCAGTGTCTGCTCTGTTCATAATCAAAATCTATAGGAGAAATGGATACAGAGCAGATGTTGAATGGAAGCTGACCTCATTTCAGAGGTTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCGGAGAACAACGTTATTGGGAGCGGTGGATCCGGGAAAGTTTATCGAATCCCAGTGAATAGTTTGGGCGAAACAGTGGCCGTGAAGAAAATATGGAACAACAGAAAGTCAGACCATAAGCTCGAGAAACAATTCATGGCGGAAGTGAAAATCCTCAGTTCAATTCGACACAACAACATAATCAAACTCCTCTGCTGCGTTTCTTGCGAGACTTCAAAGCTCCTCGTTTATGAGTACATGGAGAAGCAAAGTCTTGATAAGTGGCTACATAAGAACTCGCCGCCGAGAATTACAGGCTCAGAACCTATTAGTGGTGTCGCCCTCGATTGGCCGACAAGATTTCAAATTGCAGTAGGGGCAGCACAAGGCCTCTGTTATATGCACCACGAATGCTCCCCACCGGTAATTCATAGAGATTTAAAGTCCAGCAATATCTTACTAGATTCAGATTTCAATGCCAAAATAGCAGATTTTGGCTTAGCCAAGTTGCTCATAAAGCAAGGGGAACCGGCTTCAGTCTCCGCCGTTGCTGGCTCTTTTGGATACATAGCTCCAGAGTATGCTCAGACACCAAGAATTAACGAGAAGATCGATGTGTTTAGCTTTGGAGTCATTCTTCTGGAGTTGGCAACTGGAAAGGAAGCTCTCAACGGCGATGCAGACTCATCTCTGGCAGAGTGGGCTTGGGATTATATTCAAAAAGGCAAACCGATAGCCGATGCATTGGATGAGGATGTGAAGGAGCCACAATATCTTGATGAAATGTGCAGTGTTTTCAAACTGGGTTTGATCTGCACTTCTGGTTTGCCAACCAACCGGCCGAACATGAATCAAGCACTGCAAATCTTGATCCGCAGCCGGACCTCGGCTCCCCAAAACCATGGAGACAAAAAACAGGACCAGTGA 2988 43.14 MTTSLSSLSLFFFLKPISFFLLFLCFHHVNSQLYQREHSVLLRINRFWKNQAPITHWLSSNVSHCSWPEVQCTNNSVTALFFSFYNLNGTIPSFICDLKNLTHLDFQLNFFTGGFPTALYSCSNLNYLDLSQNLLTGPIPDDVDRLSRLQFLSLGGNSFSGEIPVSISRLSELRFLHLYVNQFNGTYPSEIGNLLNLEELLMAYNLQLEPAELPSTFAQLSKLTYLWMAKSNVIGEIPEWIGNLTALVKLDLSRNNLIGKIPNSLFTLKNLSIVYLFKNNLSGEIPQRIDSKGIIEYDLSENNLTGRIPAAIGDLQNLTALLLFTNHLYGEIPESIGRLPLLTDVRLFDNNLNGTLPPDFGRNLILEGFQVNSNKFTGSLPEHLCSGGKLKGLIAYENNLSGELPKSLGNCDSLIIVDVHENNISGEIPAGLWTALNLTYAVMNNNSFTGDFPLTVSKNLARFQISNNKISGEIPSELSSFWNLTEFEASNNLLTGNIPEELTALSKLYKLSLDGNQLNGELPKKIFSWKSLQRLKLNGNRLSGEIPDELGYLPNLNDLDLSENQLSGSIPISLGKLALNFLNLSSNFLSGVIPSALENAIFARSFLNNPSLCSNNAVLNLDGCSLRTQNSRKISSQHLALIVSLGVIVVILFAVSALFIIKIYRRNGYRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETVAVKKIWNNRKSDHKLEKQFMAEVKILSSIRHNNIIKLLCCVSCETSKLLVYEYMEKQSLDKWLHKNSPPRITGSEPISGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSDFNAKIADFGLAKLLIKQGEPASVSAVAGSFGYIAPEYAQTPRINEKIDVFSFGVILLELATGKEALNGDADSSLAEWAWDYIQKGKPIADALDEDVKEPQYLDEMCSVFKLGLICTSGLPTNRPNMNQALQILIRSRTSAPQNHGDKKQDQ 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1443816 1447402 + MELO3C015415.2.1 Cme02g00185 320074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00185 995 ProSiteProfiles Protein kinase domain profile. 694 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00185 995 Gene3D Ribonuclease Inhibitor 186 291 IPR032675 -
Cme02g00185 995 Gene3D Ribonuclease Inhibitor 34 185 IPR032675 -
Cme02g00185 995 Pfam Leucine rich repeat 100 158 IPR001611 GO:0005515
Cme02g00185 995 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Cme02g00185 995 ProSitePatterns Protein kinases ATP-binding region signature. 700 724 IPR017441 GO:0005524
Cme02g00185 995 Gene3D Phosphorylase Kinase; domain 1 676 773 - -
Cme02g00185 995 Gene3D Ribonuclease Inhibitor 462 647 IPR032675 -
Cme02g00185 995 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 986 - -
Cme02g00185 995 Gene3D Ribonuclease Inhibitor 292 461 IPR032675 -
Cme02g00185 995 PRINTS Leucine-rich repeat signature 125 138 - -
Cme02g00185 995 PRINTS Leucine-rich repeat signature 553 566 - -
Cme02g00185 995 Gene3D Transferase(Phosphotransferase) domain 1 774 995 - -
Cme02g00185 995 SUPERFAMILY RNI-like 298 645 - -
Cme02g00185 995 SUPERFAMILY Protein kinase-like (PK-like) 688 977 IPR011009 -
Cme02g00185 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Cme02g00185 995 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 17 986 - -
Cme02g00185 995 SUPERFAMILY L domain-like 51 288 - -
Cme02g00185 995 SMART serkin_6 694 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00185 995 Pfam Protein kinase domain 696 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00185 995 SMART LRR_typ_2 244 268 IPR003591 -
Cme02g00185 995 SMART LRR_typ_2 553 577 IPR003591 -
Cme02g00185 995 SMART LRR_typ_2 146 170 IPR003591 -
Cme02g00185 995 SMART LRR_typ_2 315 339 IPR003591 -
Cme02g00185 995 SMART LRR_typ_2 505 529 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00185 Cme-Chr2:1443816 Cme03g01761 Cme-Chr3:26123660 0 dispersed
Cme02g00184 Cme-Chr2:1438086 Cme02g00185 Cme-Chr2:1443816 6.18E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64664 PF00069 Pkinase 1.40E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00185 - - csv:101214935 1828.53