Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g00207 | ATGTTAATCAGTGAACGACACCGTCCTGGTCCGGTGGTTCATATCACTCCATTGACCATACCGGAGGAACCTACGGCAACCGAGACGCGGTTTCCTTATCCTTTGAGTGGAATCTCGGTGAGTTCTGATGGTAATGCCAATGGCGGTGATTATTCTCCTTATTATCTTCAGGAAGCTTTAGCGGCACTTCAGAGGTATACGAATGAGTCGGAGATCGAGTCTGATTCGGAGTTGTCTGGACGGGAAGCGGACGTTCCGTTGAATGCTTACTCGTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACTCGTGGACGTTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAATATCATTATTCTGGTACGGCGTGTCCTGATTTTCGTAAAGGTAGCTGTAAGAAAGGAGATTCATGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAAGATGGAACCAACTGTAGAAGGAGAGTCTGTTTCTTCGCTCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGTCCGAGAAGCGCGAATTCGCCTGAGTCGTATGATGAATCTCCTCTTCGGCAGTCTGTGGATGGACCCTGTTCTAAATCGATGCCGTTTATGTCCTCTCCTGTTTCTGTTTCGCCGACAGCGACTCCGGTGGACTCCCCACCGTTATCCCCCATGACTCGTTCGCTCGGCCGGTCACTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCCCTCCGGAACTTGCATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGTAGCCTTCCCACAACTCCAACTCGGGCTCCGACTGGTCATGGAGTTGGACTGCTTGATTTCTCAGAGTATGGATTCGAGGAGGAACCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCAGATGTTGAATGGGTATCAGAGCTAGTGAAGTGA | 1149 | 50.48 | MLISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSVDGPCSKSMPFMSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEYGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1614273 | 1615953 | - | MELO3C015436.2.1 | Cme02g00207 | 320096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g00207 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 382 | IPR045234 | - | |
Cme02g00207 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 159 | IPR000571 | GO:0046872 | |
Cme02g00207 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872 | |
Cme02g00207 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872 | |
Cme02g00207 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872 | |
Cme02g00207 | 382 | MobiDBLite | consensus disorder prediction | 197 | 257 | - | - | |
Cme02g00207 | 382 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 382 | - | - | |
Cme02g00207 | 382 | Gene3D | - | 134 | 198 | - | - | |
Cme02g00207 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872 | |
Cme02g00207 | 382 | MobiDBLite | consensus disorder prediction | 197 | 215 | - | - | |
Cme02g00207 | 382 | MobiDBLite | consensus disorder prediction | 226 | 257 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00207 | Cme-Chr2:1614273 | Cme03g02135 | Cme-Chr3:28568077 | 3.85E-58 | dispersed | |
Cme01g00304 | Cme-Chr1:2271097 | Cme02g00207 | Cme-Chr2:1614273 | 3.08E-65 | transposed | |
Cme04g01644 | Cme-Chr4:23708827 | Cme02g00207 | Cme-Chr2:1614273 | 1.00E-57 | transposed | |
Cme04g02194 | Cme-Chr4:29184502 | Cme02g00207 | Cme-Chr2:1614273 | 4.27E-58 | transposed | |
Cme05g02028 | Cme-Chr5:28697204 | Cme02g00207 | Cme-Chr2:1614273 | 7.11E-154 | transposed | |
Cme10g01094 | Cme-Chr10:9857173 | Cme02g00207 | Cme-Chr2:1614273 | 1.22E-53 | transposed | |
Cme11g01387 | Cme-Chr11:20650326 | Cme02g00207 | Cme-Chr2:1614273 | 2.06E-57 | transposed | |
Cme02g00207 | Cme-Chr2:1614273 | Cme07g00245 | Cme-Chr7:1573011 | 9.14E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40854 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g00207 | - | - | csv:101204432 | 761.525 |