Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00207 ATGTTAATCAGTGAACGACACCGTCCTGGTCCGGTGGTTCATATCACTCCATTGACCATACCGGAGGAACCTACGGCAACCGAGACGCGGTTTCCTTATCCTTTGAGTGGAATCTCGGTGAGTTCTGATGGTAATGCCAATGGCGGTGATTATTCTCCTTATTATCTTCAGGAAGCTTTAGCGGCACTTCAGAGGTATACGAATGAGTCGGAGATCGAGTCTGATTCGGAGTTGTCTGGACGGGAAGCGGACGTTCCGTTGAATGCTTACTCGTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACTCGTGGACGTTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAATATCATTATTCTGGTACGGCGTGTCCTGATTTTCGTAAAGGTAGCTGTAAGAAAGGAGATTCATGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAAGATGGAACCAACTGTAGAAGGAGAGTCTGTTTCTTCGCTCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGTCCGAGAAGCGCGAATTCGCCTGAGTCGTATGATGAATCTCCTCTTCGGCAGTCTGTGGATGGACCCTGTTCTAAATCGATGCCGTTTATGTCCTCTCCTGTTTCTGTTTCGCCGACAGCGACTCCGGTGGACTCCCCACCGTTATCCCCCATGACTCGTTCGCTCGGCCGGTCACTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCCCTCCGGAACTTGCATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGTAGCCTTCCCACAACTCCAACTCGGGCTCCGACTGGTCATGGAGTTGGACTGCTTGATTTCTCAGAGTATGGATTCGAGGAGGAACCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCAGATGTTGAATGGGTATCAGAGCTAGTGAAGTGA 1149 50.48 MLISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSVDGPCSKSMPFMSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEYGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1614273 1615953 - MELO3C015436.2.1 Cme02g00207 320096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00207 382 PANTHER UNKEMPT FAMILY MEMBER 8 382 IPR045234 -
Cme02g00207 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 159 IPR000571 GO:0046872
Cme02g00207 382 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Cme02g00207 382 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Cme02g00207 382 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872
Cme02g00207 382 MobiDBLite consensus disorder prediction 197 257 - -
Cme02g00207 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 382 - -
Cme02g00207 382 Gene3D - 134 198 - -
Cme02g00207 382 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Cme02g00207 382 MobiDBLite consensus disorder prediction 197 215 - -
Cme02g00207 382 MobiDBLite consensus disorder prediction 226 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00207 Cme-Chr2:1614273 Cme03g02135 Cme-Chr3:28568077 3.85E-58 dispersed
Cme01g00304 Cme-Chr1:2271097 Cme02g00207 Cme-Chr2:1614273 3.08E-65 transposed
Cme04g01644 Cme-Chr4:23708827 Cme02g00207 Cme-Chr2:1614273 1.00E-57 transposed
Cme04g02194 Cme-Chr4:29184502 Cme02g00207 Cme-Chr2:1614273 4.27E-58 transposed
Cme05g02028 Cme-Chr5:28697204 Cme02g00207 Cme-Chr2:1614273 7.11E-154 transposed
Cme10g01094 Cme-Chr10:9857173 Cme02g00207 Cme-Chr2:1614273 1.22E-53 transposed
Cme11g01387 Cme-Chr11:20650326 Cme02g00207 Cme-Chr2:1614273 2.06E-57 transposed
Cme02g00207 Cme-Chr2:1614273 Cme07g00245 Cme-Chr7:1573011 9.14E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40854 PF00642 zf-CCCH 1.70E-06 CL0537 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00207 - - csv:101204432 761.525