Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00224 ATGGAGGAAGGTCATCCAGACGTGGCTGGGAAAGTGGTTGTTGTCGCAATTAAAGCCACTTCGAAGGAAGTTTCTAAAGCTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAACCTGGAGATCATATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGGTGCGGGGATTTTCTCGACTTACCAGTGATTGCGCGATCGGTCATTTGAGAACTCATTCGGGAACTTTTTCCGATCGGAAGGATGACATTGTGCATTCATGTTCTCAGATGGTGCATCAGCTTCATGGTGCATATGACTCACTGAAGATAAAAGTCAGAATCAAAGTTCTTTCCGGCTTGGTTCGGGGTATGGTGGCTACCGAAGCTAAGAAAGCTCAATCAAACTGGGTGATATTGGATAAGAATTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCGAAGGTTCTTCGTTTGAATTTGATGGAATCCCCTAAAATGAATGCTAGAGAAGCTTGGATATCGTCACATGAATTAGACGTTTCTCAGAAGTGCCTTAAAAGCTATTTCGATGAATCAATCATGTTTAGGGCTCCTGATGTGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTTTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCGGATGTGGGCAGTTCGTCCTTGTTCTCTGGGATTTGTGGAAGCTTGAGAAATGATTCCAGAACAGCTGTCGATGGAGGGAGAAACATGTCTGGATCTGAATATGATTCTGAGAGTGAAAAGCAAACTCCCTCAGTTTCATATTTCCAGCGTTGTATGGTTGATATTATGAGTTCCCGGCGTAAATTCCAGCAACATGCAATGGAAGAATCACAAAATGCTCATCATAGACCTCCGGCTCCAACACGTCAAGGTCTGGTAAAAAAAATGTCAACTCTTTCTGTAGAACCTAGCCATGATGTGGCGCATCAGAGTACTGATATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTGTCCAGAAAAGCACCTCTAGGCCCTCCTCCTCTATGTTCTATGTGCCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCTGAACTTGAAGTCGCTACAAGTGGGTTTGCACAAACAAATTTTTTGGCTGAGGGTGGATTTGGATCTGTGCACCGAGGCATCTTATCAGATGGACAAGTTGTTGCTGTCAAGCAATATAAACTGGCTAGTACACAGGGAGATCGAGAATTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGAAATGTTGTGATGCTTATTGGCTTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTTTATGGAAGAAATCGTGAACCATTGCAATGGTCGGCACGACAGAAGATTGCAGTCGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGTCCAAACAATATCCTCCTTACTCATGATTTTGAGCCACTAGTTGGAGATTTTGGGCTGGCAAGGTGGCAACCGGATGGTGACCTAGCAGTAGAAACCAGAATCCTTGGGAGATTTGGCTACCTGGCTCCTGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCCGATACATACTCATTTGGCGTTGTCTTGCTGGAACTTGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCACGAAACCTGTTGAGGAAAAATGCGATCTCTGAACTAGTTGATCCATCTTTGAGGAACTGTTATTCAGATGAGGAAGTTCACCGCATGCTGCAATGTGCTTCCTTGTGCATAAAGCGTGATCCATACGTAAGACCGCGTATGTCTCAGGTGCTTCGGGTGTTGGAGGGCGACATCGTTCTGTAA 2016 44.49 MEEGHPDVAGKVVVVAIKATSKEVSKAALVWALTHVVQPGDHIKLLVVIPSHQSSKWVRGFSRLTSDCAIGHLRTHSGTFSDRKDDIVHSCSQMVHQLHGAYDSLKIKVRIKVLSGLVRGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKMNAREAWISSHELDVSQKCLKSYFDESIMFRAPDVTPDSTPDVESPFTVTDIGTSSISSSDVGSSSLFSGICGSLRNDSRTAVDGGRNMSGSEYDSESEKQTPSVSYFQRCMVDIMSSRRKFQQHAMEESQNAHHRPPAPTRQGLVKKMSTLSVEPSHDVAHQSTDISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGILSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNREPLQWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKNAISELVDPSLRNCYSDEEVHRMLQCASLCIKRDPYVRPRMSQVLRVLEGDIVL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1798667 1803642 + MELO3C015454.2.1 Cme02g00224 320113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00224 671 MobiDBLite consensus disorder prediction 327 346 - -
Cme02g00224 671 MobiDBLite consensus disorder prediction 297 317 - -
Cme02g00224 671 PANTHER - 11 671 - -
Cme02g00224 671 CDD STKc_IRAK 401 667 - -
Cme02g00224 671 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00224 671 MobiDBLite consensus disorder prediction 254 276 - -
Cme02g00224 671 Pfam Protein tyrosine and serine/threonine kinase 399 664 IPR001245 GO:0004672|GO:0006468
Cme02g00224 671 Gene3D Transferase(Phosphotransferase) domain 1 471 669 - -
Cme02g00224 671 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672|GO:0006468
Cme02g00224 671 SMART tyrkin_6 395 665 IPR020635 GO:0004713|GO:0006468
Cme02g00224 671 PANTHER OS01G0253100 PROTEIN 11 671 IPR045271 GO:0004714|GO:0006468
Cme02g00224 671 Gene3D Phosphorylase Kinase; domain 1 366 470 - -
Cme02g00224 671 SUPERFAMILY Protein kinase-like (PK-like) 378 663 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00224 Cme-Chr2:1798667 Cme04g00634 Cme-Chr4:6199318 7.85E-180 dispersed
Cme11g00380 Cme-Chr11:3826598 Cme02g00224 Cme-Chr2:1798667 5.16E-78 dispersed
Cme05g00003 Cme-Chr5:33911 Cme02g00224 Cme-Chr2:1798667 1.25E-72 transposed
Cme08g00480 Cme-Chr8:2981849 Cme02g00224 Cme-Chr2:1798667 1.26E-70 transposed
Cme10g00750 Cme-Chr10:4810408 Cme02g00224 Cme-Chr2:1798667 1.54E-06 transposed
Cme11g00032 Cme-Chr11:332278 Cme02g00224 Cme-Chr2:1798667 1.14E-68 transposed
Cme11g01956 Cme-Chr11:27612220 Cme02g00224 Cme-Chr2:1798667 2.89E-75 transposed
Cme02g00224 Cme-Chr2:1798667 Cme04g01192 Cme-Chr4:16312530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64666 PF07714 PK_Tyr_Ser-Thr 4.20E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00224 - - csv:101208373 1305.04