Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00246 ATGGTTTGGCTAATTCTTATGTTAATAGGATTCAGAAACTCTCCACCCCCTTCAACTTTTTCTGCATTTCCTCCAGTTTTAAGATTCAGCAACATTAATGGACCAAGCTCAGTGCCTCAGCAAAATGAGTCAACTGAGCTACTACCGGTTATGTACCCATCAGTTGCTTCAGGTCCTTTGCCTGATACAATCAAAGGGTTTATACCGTCCGCTTCACCTCGTGCTCTGACTGAGTCACCACCATTTAATAGTATGCCTCAGCCACTTTTACCAGTTCAACCAAATGCTCCATCGATTTCACCAAGTGCACCAGAGCCAGGAGGCTCAGCTGTATCATCTGCAAATTCTCCACATTATCCTCCAGCAAGTCCCTTGCCACATGAGCAAACAAATACTTCATCAAATGTAGCTCCAACCCCTGAGCCCATTTCTCCAGCAAGCAAGTTGCCTAAGAACTCACCGGTTAGTCATCCGGTATTTCCTGAAAGACCTCCATCCATATTACCAGAGCCCGATATCTCTCCAGCAATAGCTATTTCCCCAAAAGCTGGTCACAAAAAGAGATTAGAAGCACCAGCAGCCACACCTTATAATGCACTTCCCAAGTATACGCCACCAGTGAATCATTCCCCAGAAGAAGCTCCTTCCAGTCACAATGACATAGGACATTCTCAACAACCACCGATCCTTACACCGCAAAAAGCTCCATTTCATAGTGTAAATCTTTCTCCAACTTCTCCTCCTTTGCCCTCAAATTATAAGCATCCCAGAAGCAAGAATCATATCAGTCATGCACCTGCACCATCATATCCAATTTCCTCCCACACGACGAAAGCACCGGGTCCAGTTATTTCTACAGCACAACATTCGCCAGGAAGAAGACACCATTCTCCACCTCCAAAATCAGAACCTTCGCCAATATCTCCTTCACATTATGCTCCTCCACCTCTTTCGACTCATGTTTCACCTTCTCCTTCACCACACCAAAAAACATCTGGGCATACTAGAAGACATTTTTATCCTCCTAAAGCTTCCCCATCGAAACATTCAGCAAAAAGCCCGAAGATGTCACCAATTCATACGTTGCCTCCTCCACCTCCCAATGAAGATTGTTTTACTACCCAGTGCATCGAGCCATATACAAATACTCCCCCAGGATCTCCCTGTGGATGTGTTTGGCCGATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACATTCTTCCCTCTGGTCTCAGAGCTGGCAGCGGAAATTGCTGCTGGGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCGGATAAGACTGTTATTCTTATTGACTTAGTACCACTGGGCGAAAAATTTGACAATACTACAGCCTTTTTAACTTATCAAAGGTTTTGGCATAAGAAGGTTTCGATCAAAGCTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGACTCAGGACTAGATAACGAGCCTTATTTCGGTAATAGTAATGACGCGAGGGCAGTAAAACCAATTGGTGTTGATGTGCAGAACAGACAGCACAAAGATAGGCTAAGTGGTGGTATGATTGCCATTGTTGCCCTATCAACTACTGTTGCCGTGGTCTTATGTGTTGCAACTGCTTGGATTTTACTCTTCAAACGTAATGATGGCCTTTGTCAGCCAAAACCAACTCCACATGTTTCGTTATCCTCCCTCAATAAGCCATCAGGTGCTGGTGGATCAGTTATGGCAACCATGCCTAGTTCTGCCTCTTTATCCATTGGATCTAGCATTGCCCCATATTCAGGATCAGCCAAGACATTCAGTGCCTCTGACATTGAGAGAGCCACCAATAATTTTGATCCTTCAAGAATATTGGGAGAGGGGGGCTTTGGACGTGTCTATAGAGGCATTCTCGAAGATGGTACTGAAGTAGCAGTCAAAGTTCTCAAGAGAGATGATCTTCAGGGTGGTCGAGAATTCTTGGCTGAAGTCGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTTAAGTTGATTGGAATATGTACTGAGGAACGTAGCCGCTCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGAAGCCCGGATCAAGATAGCACTCGGCGCTGCTAGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGGGTCATACATCGAGACTTCAAATCCAGCAATATCTTGTTAGAACATGATTTTACACCAAAAGTTTCTGACTTTGGATTGGCAAGAACTGCAATGGATGAGGAAAGTAGACACATATCAACACGTGTCATGGGAACTTTCGGGTATGTAGCGCCAGAATATGCAATGACTGGTCATCTACTTGTGAAGAGTGATGTTTATAGCTACGGAGTTGTTCTTCTTGAGTTACTAACTGGGAGGAAACCAGTAGATATGTCGCAACCTCCGGGTGAAGAAAATCTGGTTTCTTGGGCTCGTCCTCTACTCACAAGCAAAGAAGGCCTAGATGTTATTATTGACAAATCACTAGATTCTAATGTTCCTTTCGAAAATATTGCTAAAGTAGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTGTCACATCGACCTTTCATGGGAGAGGTAGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACACAACTCAAGAAACAAGCTCACATCCTGGTTCAAGCCCAGAGAGTTCAACTATCGATACGAATGATGATGAAGCATCAAGTTCAAGATACATGCTAGACTTTTTTCATAGTGAATATTTAGTACCTAACTCAATTCCAGGTCTAGATAGCATCGATACACATCTCTCAATATCAGACCTGTTAAATACTTCGATCGATAACGGGAAACAAGAATCTAGATCACTTGAAAGATGCTTCAGTTCTAGTCCTCATAGAATCAGAAAAGGTGAGAGGAATTTTTGGCAAAGAATGAAAAGATACTCAGGAAGTAGCATAAGTGAACATGGCATGCCTACTAAAGCATGGTCATAA 3093 43.45 MVWLILMLIGFRNSPPPSTFSAFPPVLRFSNINGPSSVPQQNESTELLPVMYPSVASGPLPDTIKGFIPSASPRALTESPPFNSMPQPLLPVQPNAPSISPSAPEPGGSAVSSANSPHYPPASPLPHEQTNTSSNVAPTPEPISPASKLPKNSPVSHPVFPERPPSILPEPDISPAIAISPKAGHKKRLEAPAATPYNALPKYTPPVNHSPEEAPSSHNDIGHSQQPPILTPQKAPFHSVNLSPTSPPLPSNYKHPRSKNHISHAPAPSYPISSHTTKAPGPVISTAQHSPGRRHHSPPPKSEPSPISPSHYAPPPLSTHVSPSPSPHQKTSGHTRRHFYPPKASPSKHSAKSPKMSPIHTLPPPPPNEDCFTTQCIEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAAGVFVKQSQVRIIGANAANQQPDKTVILIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKASYFGNYEVLYVRYPGLPQSPPSGDSGLDNEPYFGNSNDARAVKPIGVDVQNRQHKDRLSGGMIAIVALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVSLSSLNKPSGAGGSVMATMPSSASLSIGSSIAPYSGSAKTFSASDIERATNNFDPSRILGEGGFGRVYRGILEDGTEVAVKVLKRDDLQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRSLVYELIPNGSVESHLHGVDKETAPLDWEARIKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVSWARPLLTSKEGLDVIIDKSLDSNVPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNTTQETSSHPGSSPESSTIDTNDDEASSSRYMLDFFHSEYLVPNSIPGLDSIDTHLSISDLLNTSIDNGKQESRSLERCFSSSPHRIRKGERNFWQRMKRYSGSSISEHGMPTKAWS 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2012503 2017901 - MELO3C015475.2.1 Cme02g00246 320135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00246 1030 MobiDBLite consensus disorder prediction 157 171 - -
Cme02g00246 1030 MobiDBLite consensus disorder prediction 210 248 - -
Cme02g00246 1030 MobiDBLite consensus disorder prediction 916 938 - -
Cme02g00246 1030 Gene3D Transferase(Phosphotransferase) domain 1 709 928 - -
Cme02g00246 1030 ProSiteProfiles Protein kinase domain profile. 633 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00246 1030 ProSitePatterns Protein kinases ATP-binding region signature. 639 661 IPR017441 GO:0005524
Cme02g00246 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Cme02g00246 1030 MobiDBLite consensus disorder prediction 69 366 - -
Cme02g00246 1030 PANTHER OS01G0750732 PROTEIN 190 1030 - -
Cme02g00246 1030 MobiDBLite consensus disorder prediction 84 101 - -
Cme02g00246 1030 SUPERFAMILY Protein kinase-like (PK-like) 613 906 IPR011009 -
Cme02g00246 1030 MobiDBLite consensus disorder prediction 267 284 - -
Cme02g00246 1030 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 190 1030 - -
Cme02g00246 1030 CDD STKc_IRAK 639 907 - -
Cme02g00246 1030 MobiDBLite consensus disorder prediction 301 322 - -
Cme02g00246 1030 Gene3D Phosphorylase Kinase; domain 1 609 708 - -
Cme02g00246 1030 Pfam Protein tyrosine and serine/threonine kinase 637 906 IPR001245 GO:0004672|GO:0006468
Cme02g00246 1030 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00246 Cme-Chr2:2012503 Cme11g02350 Cme-Chr11:30503519 1.73E-106 dispersed
Cme01g01200 Cme-Chr1:15214978 Cme02g00246 Cme-Chr2:2012503 1.04E-48 transposed
Cme04g00927 Cme-Chr4:12444515 Cme02g00246 Cme-Chr2:2012503 0 transposed
Cme07g02090 Cme-Chr7:25650633 Cme02g00246 Cme-Chr2:2012503 1.25E-121 transposed
Cme01g02844 Cme-Chr1:35340014 Cme02g00246 Cme-Chr2:2012503 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64667 PF07714 PK_Tyr_Ser-Thr 7.50E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00246 - - csv:101218980 1883.61