Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00272 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTTCCTAAAGAAGAGCAATCCATAGCGACGTTCCTAACGCAGAGTGGTACGTTTAAAGATGGTGATCTGCTTGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCAGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGTACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTTTATGATAATGGATCAATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTAAAAAAGGTGCTGAAGGGGTTGTCTTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAACACATATCAAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCCCCAGAGAGAATTGTGGGAGAGGGATATGACAATAAAAGTGACATTTGGAGCCTGGGTCTGATATTACTTGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCTGGGCAAGATGAAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCTGAATTCTGTTCATTCATTTCTGCATGTGTGCAAACAGACCCAAAGAATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATAGGGATATTGACCTATCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1023 40.08 MRKGGFSNNLNLKLNLPKEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMENTYQEANTFVGTYNYMSPERIVGEGYDNKSDIWSLGLILLECATGKFPYSPPGQDEGWVNFYELMEAIVEGEPPSAPADQFTPEFCSFISACVQTDPKNRLSARELLEHPFIKMYEDRDIDLSSYFNDAGSPLATF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2283734 2286634 - MELO3C015497.2.1 Cme02g00272 320161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00272 340 CDD PKc_MAPKK_plant_like 69 320 - -
Cme02g00272 340 SUPERFAMILY Protein kinase-like (PK-like) 55 322 IPR011009 -
Cme02g00272 340 ProSiteProfiles Protein kinase domain profile. 71 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00272 340 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Cme02g00272 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Cme02g00272 340 PANTHER MAP KINASE KINASE 9 339 - -
Cme02g00272 340 Gene3D Transferase(Phosphotransferase) domain 1 150 336 - -
Cme02g00272 340 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 339 - -
Cme02g00272 340 SMART serkin_6 71 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00272 340 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cme02g00272 340 Pfam Protein kinase domain 73 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00272 Cme05g02055 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00272 Cme-Chr2:2283734 Cme04g01845 Cme-Chr4:26201523 5.87E-72 dispersed
Cme05g02012 Cme-Chr5:28599809 Cme02g00272 Cme-Chr2:2283734 3.01E-148 transposed
Cme06g01502 Cme-Chr6:14360612 Cme02g00272 Cme-Chr2:2283734 8.03E-07 transposed
Cme02g00272 Cme-Chr2:2283734 Cme05g02055 Cme-Chr5:28855837 7.13E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64669 PF00069 Pkinase 7.20E-65 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00272 K20603 - csv:101204545 665.225