Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00272 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTTCCTAAAGAAGAGCAATCCATAGCGACGTTCCTAACGCAGAGTGGTACGTTTAAAGATGGTGATCTGCTTGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCAGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGTACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTTTATGATAATGGATCAATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTAAAAAAGGTGCTGAAGGGGTTGTCTTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAACACATATCAAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCCCCAGAGAGAATTGTGGGAGAGGGATATGACAATAAAAGTGACATTTGGAGCCTGGGTCTGATATTACTTGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCTGGGCAAGATGAAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCTGAATTCTGTTCATTCATTTCTGCATGTGTGCAAACAGACCCAAAGAATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATAGGGATATTGACCTATCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1023 40.08 MRKGGFSNNLNLKLNLPKEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMENTYQEANTFVGTYNYMSPERIVGEGYDNKSDIWSLGLILLECATGKFPYSPPGQDEGWVNFYELMEAIVEGEPPSAPADQFTPEFCSFISACVQTDPKNRLSARELLEHPFIKMYEDRDIDLSSYFNDAGSPLATF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2283734 2286634 - MELO3C015497.2.1 Cme02g00272 320161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00272 340 CDD PKc_MAPKK_plant_like 69 320 - -
Cme02g00272 340 SUPERFAMILY Protein kinase-like (PK-like) 55 322 IPR011009 -
Cme02g00272 340 ProSiteProfiles Protein kinase domain profile. 71 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00272 340 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Cme02g00272 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Cme02g00272 340 PANTHER MAP KINASE KINASE 9 339 - -
Cme02g00272 340 Gene3D Transferase(Phosphotransferase) domain 1 150 336 - -
Cme02g00272 340 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 339 - -
Cme02g00272 340 SMART serkin_6 71 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00272 340 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cme02g00272 340 Pfam Protein kinase domain 73 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00272 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101204545 665.225
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g00272 Cme05g02055 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00272 Cme-Chr2:2283734 Cme04g01845 Cme-Chr4:26201523 5.87E-72 dispersed
Cme05g02012 Cme-Chr5:28599809 Cme02g00272 Cme-Chr2:2283734 3.01E-148 transposed
Cme06g01502 Cme-Chr6:14360612 Cme02g00272 Cme-Chr2:2283734 8.03E-07 transposed
Cme02g00272 Cme-Chr2:2283734 Cme05g02055 Cme-Chr5:28855837 7.13E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00272 CCT 28 338 MAP Kinase Kinase Gene Family AT4G26070 67.8 8.9e-127 450.3
Cme05g02055 CCT 7 303 MAP Kinase Kinase Gene Family AT4G26070 67.1 1.2e-115 413.3
Cme05g02012 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 55.3 1.6e-107 386.3
Cme02g00272 CCT 1 311 MAP Kinase Kinase Gene Family AT4G29810 67.8 2.6e-126 448.7
Cme05g02012 . 12 326 MAP Kinase Kinase Gene Family AT4G29810 59.7 2.6e-110 395.6
Cme05g02055 CCT 9 277 MAP Kinase Kinase Gene Family AT4G29810 66.7 1.1e-105 380.2
Cme04g01845 . 115 599 MAP Kinase Kinase Gene Family AT5G40440 78.8 6.6e-227 783.5
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.7 2.4e-130 462.2
Cme12g01812 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 1.6e-84 310.1
Cme04g01310 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 68.7 1.5e-129 459.5
Cme12g01812 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.0 5.1e-85 311.6
Cme05g02012 . 3 356 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-171 596.7
Cme02g00272 CCT 7 337 MAP Kinase Kinase Gene Family AT5G56580 55.9 2.3e-109 392.5
Cme05g02055 CCT 14 292 MAP Kinase Kinase Gene Family AT5G56580 59.8 2.4e-98 355.9
Cme12g01812 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.9 4.4e-109 391.3
Cme04g01310 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 53.2 1.7e-76 283.1
Cme12g01812 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.3 1.3e-81 300.1
Cme12g01812 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 4.6e-114 407.9
Cme04g01310 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 3.5e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64669 PF00069 Pkinase 7.20E-65 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00272 Cme_Chr02 FPKM 1.238735 1.20745 2.106033 1.946212 1.197282 0.863463 1.066499 2.662051 2.455257 2.686389