Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g00272 | ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTTCCTAAAGAAGAGCAATCCATAGCGACGTTCCTAACGCAGAGTGGTACGTTTAAAGATGGTGATCTGCTTGTAAACAGAGATGGGGTTCGGATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCAGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGTACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTTTATGATAATGGATCAATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTAAAAAAGGTGCTGAAGGGGTTGTCTTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAACACATATCAAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCCCCAGAGAGAATTGTGGGAGAGGGATATGACAATAAAAGTGACATTTGGAGCCTGGGTCTGATATTACTTGAGTGTGCAACCGGAAAATTTCCTTATTCTCCACCTGGGCAAGATGAAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCAGCCGACCAATTTACTCCTGAATTCTGTTCATTCATTTCTGCATGTGTGCAAACAGACCCAAAGAATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATAGGGATATTGACCTATCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA | 1023 | 40.08 | MRKGGFSNNLNLKLNLPKEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMENTYQEANTFVGTYNYMSPERIVGEGYDNKSDIWSLGLILLECATGKFPYSPPGQDEGWVNFYELMEAIVEGEPPSAPADQFTPEFCSFISACVQTDPKNRLSARELLEHPFIKMYEDRDIDLSSYFNDAGSPLATF | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2283734 | 2286634 | - | MELO3C015497.2.1 | Cme02g00272 | 320161 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g00272 | 340 | CDD | PKc_MAPKK_plant_like | 69 | 320 | - | - | |
Cme02g00272 | 340 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 322 | IPR011009 | - | |
Cme02g00272 | 340 | ProSiteProfiles | Protein kinase domain profile. | 71 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g00272 | 340 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 149 | - | - | |
Cme02g00272 | 340 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 174 | 186 | IPR008271 | GO:0004672|GO:0006468 | |
Cme02g00272 | 340 | PANTHER | MAP KINASE KINASE | 9 | 339 | - | - | |
Cme02g00272 | 340 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 336 | - | - | |
Cme02g00272 | 340 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 9 | 339 | - | - | |
Cme02g00272 | 340 | SMART | serkin_6 | 71 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g00272 | 340 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524 | |
Cme02g00272 | 340 | Pfam | Protein kinase domain | 73 | 316 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g00272 | Cme05g02055 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00272 | Cme-Chr2:2283734 | Cme04g01845 | Cme-Chr4:26201523 | 5.87E-72 | dispersed | |
Cme05g02012 | Cme-Chr5:28599809 | Cme02g00272 | Cme-Chr2:2283734 | 3.01E-148 | transposed | |
Cme06g01502 | Cme-Chr6:14360612 | Cme02g00272 | Cme-Chr2:2283734 | 8.03E-07 | transposed | |
Cme02g00272 | Cme-Chr2:2283734 | Cme05g02055 | Cme-Chr5:28855837 | 7.13E-161 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64669 | PF00069 | Pkinase | 7.20E-65 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g00272 | K20603 | - | csv:101204545 | 665.225 |