Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00277 ATGAGTGGACCAGTTAACATCATTGTAGGTTCGCATGTCTGGATCGAAGATCCAAAACTAGCTTGGATTGACGGTGAAGTTTTCCGCATCAATGGCGAGGAAGTTCATGTTCGGACTACCAATGGGAAAACAGCTGTTGCCAATATATCAAAGATATTCCCCAAGGATACTGAAGCACCTGCTGCAGGTGTCGATGACATGACAAAGCTTTCATACTTGCATGAGCCTGGAGTTCTGAGCAACTTGGCAACCAGATATGAACTCAATGAAATATATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGGCTACCTCATCTTTATGATACTCACATGATGGAGCAATACAAAGGAGCTGGATTTGGAGAACTGAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATACAGAGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACCACGAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGGTCTGGAGTGGAAGGGCGAACTGTTGAACAACAAGTCCTAGAATCCAATCCAGTCCTTGAAGCATTTGGCAATGCAAAAACTGTTAGGAACAACAATTCAAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATATCTGGGGCAGCTGTCCGAACTTATTTGCTTGAAAGGTCTCGAGTATGTCAGATCTCGGATCCTGAGAGAAATTATCATTGCTTTTACCTTCTCTGTGCAGCTCCTCCTGAGGAAAGGGAGAAGTATAAGTTAGCAGACCCTAAATCGTTCCACTACTTAAATCAATCTAAATGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAAGCAATTTTTAGGGTTGTAGCTGCAATTTTACATCTTGGAAATATCGAATTTGCAAAGGGAGAGGAGATAGATTCTTCAGTCATTAAGGATGACAAATCCAGATTCCATCTTAATACTACTGCCGAACTGCTTAAGTGTGATGCAAAGAGTTTGGAAGACGCACTGATTCAACGTGTCATGGTAACGCCAGAAGAGGTTATAACTCGAACTCTTGATCCTGTGGCTGCTGTGGGTAGTAGGGATGCCTTGGCTAAAACAATTTATTCACGACTCTTTGATTGGCTTGTGGAGAAGATCAACAATTCAATTGGGCAAGACCCAAATTCTAAATCATTGATTGGAGTTTTGGATATTTATGGATTTGAGAGTTTTAAATTCAACAGTTTTGAACAGTTCTGCATCAATTTCACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAGCAAATCAATTGGAGTTATATTGAGTTTGTTGATAACCAGGACGTGTTGGATCTGATTGAAAAGAAACCGGGAGGAATTATTGCACTTCTGGACGAGGCCTGCATGTTTCCTAAATCTACACATGAAACATTTGCTCAGAAGTTATACCAGACTTTCAAGAACAACAAGCGCTTCATTAAGCCTAAGCTATCGCGTACTAGTTTTACAATATCTCATTATGCTGGAGAGGTGACTTATTTGGCAGATCTATTTTTGGACAAAAACAAAGACTATGTGGTAGCAGAACATCAGGCCCTCTTAACAGCTTCAAAATGCTCCTTTGCGAGAGCTTTATTTCCTCCTCAACCAGAGGAAACAGCAAAATCCTCAAAATTTTCTTCCATTGGTTCACGTTTTAAATTACAACTTCAATCCTTAATGGAGACCTTAAATTCAACAGAACCTCACTACATCAGATGTGTAAAGCCAAATAATGTTCTCAAGCCTGCTATTTTTGAGAATTCAAATGTTATCCAGCAATTGCGTTGTGGTGGTGTCCTCGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACCAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTCTGGATGGAAACTATGACGACAAGGTAGCCTGCCAGATGATCTTGGATAAAATGGGTCTGAAAGGTTATCAGATTGGTAAGACAAAAATATTCCTGAGGGCTGGGCAGATGGCTTCTCTGGATGCAAAGAGAACAGAGGTGCTTAGCAACGCTGCCAGAACTATTCAGATGCAAATTAGAACGTTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACATGTGCAATCATTTTCTCGAGGTGTTTTGGCTCGAAAACTATTTGAGCAGTTGCGACGGGAAGCAGCAGCTTTAAAGATCCAGAAGTGTTTCAAGCGATATATTGCCAGGAAATCATACTTAGATTTGCTCTCATCTGCAATCAAATTGCAAACAGGTTTAAGGGCAATGAAGGCTCGTGATGAATTCAGATTCAGAAAGCGTACCAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACATGGCGCATTCTTACTATACGAGACTCCAAAAGGCTGCACTATACACACAGTGTGGTTGGAGGCGACGAGTTGCACGGAAGGAGCTAAGAAAACTGAAAATGGCTGCAAGGGAAACTGGTGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTCACCTGGCGCTTACAACTTGAGAAGCGGATGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTACAAGATACTTTACATAGCATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTTGTCGAGGACACTGAAAAAATCAATTCCTTAATGGCTGAGGTGGAGAGTCTGAAGGCTTCGCTGCTCTCAGAGAAAACGTCGGCTGAAGAAGCTAGAAAAGCTTGTACTGATGCTGAAGCCAAAAATGTGGAGCTGACTAAAAGACTTCAAGATGCAGAACAGAAGGTGGATCAGCTTCAGGAGTCGGTCCAGAGGCTTGAAGAGAAGCTTTCAAATTCAGAATCGGAGAACCAGGTACTTCGTCAACAAGCCCTGACGATGTCGCCAACAGGAAAAGCTTTATCTGCAAGACCCAAGTCAATGATTATTCAGAGGACACCAGAGAACGGAAATATTCCACATGGAGAGGCCAAAGTATCATTGGATACAACTCTTGCATTATCAACTGTACGTGAGCCCGAATCAGAGGAAAAACCACAGAAATCACTTAATGAGAAACAGCAGGAGAACCAGGATCTGCTAGTGAAGTGCATATCTCAAGATTTGGGATTTTCTGGAGGCAAACCAGTTGCTGCTTGTGTCATCTATAAATGTCTTCTTCACTGGAGGTCGTTTGAAGTTGAAAGAACTGGCATATTTGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCCGGACAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACTTTATTGTTGCTGCTTCAACACACTCTCAAAGCTAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTACTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGATTAAGGGCATCTCCACAAAGTGGTGGACTATCGTTTCTTAATGGTCGGGGGCTTGGTAGATTGGACGATTTTCGGCAGGTTGAGGCAAAGTATCCAGCACTGTTGTTTAAGCAGCAGCTTACAGCATTTTTGGAGAAAATATATGGAATGATAAGAGACAACTTGAAGAAAGAGATCTCGCCCTTACTTGGACTATGTATTCAGGCTCCTCGGACATCCCGGGCAAGCTTAGTGAAAGGACGCTCCCAAGCAAATGCCATGGCTCAGCAAGCCTTGATTGCACATTGGCAAAGCATTGTGAAAAGCTTAAACAATTATTTGAAGATCATGAAAGCAAACTATAACTGTGATCTTACGCCGGTTTTGACAGGTTCCTCCATTCTTGGTCCCCTTCTTTTGCGACGCGAGTGTTGTTCATTCAGCAATGGCGAGTATGTGAAAGCTGGCTTGTCTGAATTGGAACAGTGGTGTTCGGGAGCAACCGAGGAAGTTATTCATCAAAAGCCCAAAAAGACATTGAATGAGATAACAAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTATATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACGCATAGTGTATCTTCAGAAGTTATTTCGAGTATGCGAATTTTGATGACTGAAGACTCCAACAATGCTATCAGCTCATTCCTGTTAGATGATGACTCTAGTATACCATTTTCTGTGGACGATATCTCCAAATCCATGAAACAAGTAGATGTAACAGATATAGATCCTCCACCGCTGATACGAGAAAACTCTGGGTTTGGGTTTTTGCTTCAACGTGCAGAGTAG 4509 41.83 MSGPVNIIVGSHVWIEDPKLAWIDGEVFRINGEEVHVRTTNGKTAVANISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCAAPPEEREKYKLADPKSFHYLNQSKCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDDKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAAVGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTASKCSFARALFPPQPEETAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFSRGVLARKLFEQLRREAAALKIQKCFKRYIARKSYLDLLSSAIKLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHMAHSYYTRLQKAALYTQCGWRRRVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRMRTDLEEEKAQEIAKLQDTLHSMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKASLLSEKTSAEEARKACTDAEAKNVELTKRLQDAEQKVDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSLDTTLALSTVREPESEEKPQKSLNEKQQENQDLLVKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTGIFDRIIQTIASSIEVPDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSGGLSFLNGRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLNNYLKIMKANYNCDLTPVLTGSSILGPLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSSIPFSVDDISKSMKQVDVTDIDPPPLIRENSGFGFLLQRAE 1502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2309626 2326170 + MELO3C015501.2.1 Cme02g00277 320166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00277 1502 Gene3D - 252 310 - -
Cme02g00277 1502 Gene3D - 439 623 - -
Cme02g00277 1502 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Cme02g00277 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 785 IPR027417 -
Cme02g00277 1502 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 SMART iq_5 757 779 IPR000048 GO:0005515
Cme02g00277 1502 SMART iq_5 734 756 IPR000048 GO:0005515
Cme02g00277 1502 SMART iq_5 782 804 IPR000048 GO:0005515
Cme02g00277 1502 SMART iq_5 830 852 IPR000048 GO:0005515
Cme02g00277 1502 SMART iq_5 805 827 IPR000048 GO:0005515
Cme02g00277 1502 SMART iq_5 853 875 IPR000048 GO:0005515
Cme02g00277 1502 CDD MYSc_Myo11 76 720 IPR036018 -
Cme02g00277 1502 Gene3D - 667 730 - -
Cme02g00277 1502 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 Coils Coil 877 957 - -
Cme02g00277 1502 Gene3D - 833 882 - -
Cme02g00277 1502 Gene3D - 785 832 - -
Cme02g00277 1502 Gene3D - 733 784 - -
Cme02g00277 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Cme02g00277 1502 PANTHER MYOSIN 5 1499 - -
Cme02g00277 1502 CDD MyosinXI_CBD 1113 1468 IPR037975 GO:0007015
Cme02g00277 1502 Pfam DIL domain 1351 1425 IPR002710 -
Cme02g00277 1502 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Cme02g00277 1502 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Cme02g00277 1502 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Cme02g00277 1502 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Cme02g00277 1502 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Cme02g00277 1502 ProSiteProfiles Dilute domain profile. 1162 1479 IPR002710 -
Cme02g00277 1502 Pfam Myosin N-terminal SH3-like domain 9 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 PANTHER BNAA02G04890D PROTEIN 5 1499 - -
Cme02g00277 1502 ProSiteProfiles IQ motif profile. 735 761 IPR000048 GO:0005515
Cme02g00277 1502 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Cme02g00277 1502 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cme02g00277 1502 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 SMART DIL_2 1348 1428 IPR002710 -
Cme02g00277 1502 Coils Coil 996 1051 - -
Cme02g00277 1502 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cme02g00277 1502 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Cme02g00277 1502 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
Cme02g00277 1502 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cme02g00277 1502 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00277 Cme-Chr2:2309626 Cme05g01814 Cme-Chr5:27032434 0 dispersed
Cme02g00277 Cme-Chr2:2309626 Cme11g02415 Cme-Chr11:30969291 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00277 K10357 - csv:101204300 2839.29