Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00283 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAAGGTGAAGAAGGGGTTCATGGAAGTAGTAAAGATCTTAATAAACCCTCTGTTGGTTCTTTTCCTGATTTTGACCTAAAAGAAACTCGGAGTTTTAGGTGCACGATTCCACGATCCTTGGTTGGGAGTTCTCCTTCACATGAGATTTCCAGAATGACTCCTCTTAAACCTCCAAAAATTCCAGGCGAAACGGTGACACGGCGTGCATCATTTGCTTGTTCGTCATTTTCGAAGCCGAAATCGAGGCTTATAGAACCTCCTTGTCCCGATGGTGAAAGTTTAGCAGAAGAAAAAGCTCTAGCAAAATCTTCACTGTATGGCTCTCCTAAGGTGGATTCTCCAGCTAAGATAACCGCTGTGACTAGTCCTAAAGAAGCTTTGAAGGCGACCCCGATAACTCCGAAAACACCGTTGATTGGAACTACTGGGAATGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCTGAAAAGAGATTGAAGAAAACAGTTATAGTGGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACTATAGACACGTTGGTGACCAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTGCTTGTATTAGTTATTTTCTGTGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTGAAGAAGAGTGTCATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAACGAGATTCTGAATTACGTTACACGAGCTCTTGGTGCTTCTCTAATTGGAGCAGGACTATGGCTGGTTAAAACTTTGTTGGTGAAGATACTCGCTGCTTCTTTTCAATGCACTAGATTCTTTGATCGGATTCAAGAATCGATCTTCCATCAATATATACTACGCATCCTATCAGGACCTCCGCTCATGGAGATGGCTGGGAGGGTCGGGAGAGCGGCAAGCACAGGACAGTTGAGTTTCAAGCATTTGAAGCAAGAAAGTGATGATGGGAATGAAGGGAAGGAAGAGGTTATCGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGGGTTCAGGATTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAGGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCCGAAACGTTGCAAAACCGGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCGTTGTTTGAAGGAGGAGCAGAAACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTATGTCGAACGCAAGTCGTTAGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCTTCTGCAGTTGTACTGATTGTGATTATCATTGAATGGCTACTTCTCATGGGTTTCTTAACTACACAAGTACTCGTCTTCATTTCATCACAGATTCTATTGGTGGTTTTCATGTTCGGTAATACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTCGTGATGCATCCATTCGATGTTGGGGATCGTTGTGTCGTAGATGGTGTCCAGATGGTTGTTGAAGAAATGAACATTTTGACCACAATCTTCTTGAGATATGATAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATTAGTAACTACTACAGGAGCCCCGAAATGAGCGACTCGATCGATTTTTCCGTCGACTTTTCCACCTCAATAGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAGACATACTTAGAAAGCAAACCGCAGTTCTGGCGACCGAACTACAGTGTCGTTGTGAAAGAAATCGAGAATGTCAACAAAATGAAACTAGCTCTATGTGTTAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAATCGTAGATCGGATTTGGTGTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGTATCAAATACCATTTGTTACCTCAAGCAGTTCAGCTCAACTATGCGAGTTCAGCAGCTGGTGGGGTTCCACTTCCACCCTCTCAAAGATGA 2307 41.27 MADKKGMEQLVLRILEGEEGVHGSSKDLNKPSVGSFPDFDLKETRSFRCTIPRSLVGSSPSHEISRMTPLKPPKIPGETVTRRASFACSSFSKPKSRLIEPPCPDGESLAEEKALAKSSLYGSPKVDSPAKITAVTSPKEALKATPITPKTPLIGTTGNEEEDDEEVYKTAELKVKEKSEKRLKKTVIVEWVAFLCLTGCLIASLTIDTLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLKKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAGRVGRAASTGQLSFKHLKQESDDGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRGSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGGAETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAVVLIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVNKMKLALCVNHTINFQNYGDKSNRRSDLVLELKKIFEDLGIKYHLLPQAVQLNYASSAAGGVPLPPSQR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2367651 2372377 + MELO3C015507.2.1 Cme02g00283 320172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00283 768 MobiDBLite consensus disorder prediction 53 77 - -
Cme02g00283 768 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
Cme02g00283 768 PIRSF Memb_At2g17000 21 764 IPR016688 -
Cme02g00283 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 756 IPR016688 -
Cme02g00283 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 756 - -
Cme02g00283 768 Gene3D - 595 644 IPR023408 -
Cme02g00283 768 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00283 Cme-Chr2:2367651 Cme07g00186 Cme-Chr7:1260419 0 dispersed
Cme01g01219 Cme-Chr1:15415621 Cme02g00283 Cme-Chr2:2367651 0 transposed
Cme05g00802 Cme-Chr5:10208879 Cme02g00283 Cme-Chr2:2367651 0 transposed
Cme11g01254 Cme-Chr11:19297825 Cme02g00283 Cme-Chr2:2367651 0 transposed
Cme02g00283 Cme-Chr2:2367651 Cme07g00182 Cme-Chr7:1211909 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00283 K22048 - csv:101209209 1410.59