Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00283 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAAGGTGAAGAAGGGGTTCATGGAAGTAGTAAAGATCTTAATAAACCCTCTGTTGGTTCTTTTCCTGATTTTGACCTAAAAGAAACTCGGAGTTTTAGGTGCACGATTCCACGATCCTTGGTTGGGAGTTCTCCTTCACATGAGATTTCCAGAATGACTCCTCTTAAACCTCCAAAAATTCCAGGCGAAACGGTGACACGGCGTGCATCATTTGCTTGTTCGTCATTTTCGAAGCCGAAATCGAGGCTTATAGAACCTCCTTGTCCCGATGGTGAAAGTTTAGCAGAAGAAAAAGCTCTAGCAAAATCTTCACTGTATGGCTCTCCTAAGGTGGATTCTCCAGCTAAGATAACCGCTGTGACTAGTCCTAAAGAAGCTTTGAAGGCGACCCCGATAACTCCGAAAACACCGTTGATTGGAACTACTGGGAATGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCTGAAAAGAGATTGAAGAAAACAGTTATAGTGGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGATTGCTAGCTTAACTATAGACACGTTGGTGACCAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTGCTTGTATTAGTTATTTTCTGTGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTGAAGAAGAGTGTCATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAACGAGATTCTGAATTACGTTACACGAGCTCTTGGTGCTTCTCTAATTGGAGCAGGACTATGGCTGGTTAAAACTTTGTTGGTGAAGATACTCGCTGCTTCTTTTCAATGCACTAGATTCTTTGATCGGATTCAAGAATCGATCTTCCATCAATATATACTACGCATCCTATCAGGACCTCCGCTCATGGAGATGGCTGGGAGGGTCGGGAGAGCGGCAAGCACAGGACAGTTGAGTTTCAAGCATTTGAAGCAAGAAAGTGATGATGGGAATGAAGGGAAGGAAGAGGTTATCGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGGGTTCAGGATTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAGGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCCGAAACGTTGCAAAACCGGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCGTTGTTTGAAGGAGGAGCAGAAACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTATGTCGAACGCAAGTCGTTAGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCTTCTGCAGTTGTACTGATTGTGATTATCATTGAATGGCTACTTCTCATGGGTTTCTTAACTACACAAGTACTCGTCTTCATTTCATCACAGATTCTATTGGTGGTTTTCATGTTCGGTAATACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTCGTGATGCATCCATTCGATGTTGGGGATCGTTGTGTCGTAGATGGTGTCCAGATGGTTGTTGAAGAAATGAACATTTTGACCACAATCTTCTTGAGATATGATAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATTAGTAACTACTACAGGAGCCCCGAAATGAGCGACTCGATCGATTTTTCCGTCGACTTTTCCACCTCAATAGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAGACATACTTAGAAAGCAAACCGCAGTTCTGGCGACCGAACTACAGTGTCGTTGTGAAAGAAATCGAGAATGTCAACAAAATGAAACTAGCTCTATGTGTTAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAATCGTAGATCGGATTTGGTGTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGTATCAAATACCATTTGTTACCTCAAGCAGTTCAGCTCAACTATGCGAGTTCAGCAGCTGGTGGGGTTCCACTTCCACCCTCTCAAAGATGA 2307 41.27 MADKKGMEQLVLRILEGEEGVHGSSKDLNKPSVGSFPDFDLKETRSFRCTIPRSLVGSSPSHEISRMTPLKPPKIPGETVTRRASFACSSFSKPKSRLIEPPCPDGESLAEEKALAKSSLYGSPKVDSPAKITAVTSPKEALKATPITPKTPLIGTTGNEEEDDEEVYKTAELKVKEKSEKRLKKTVIVEWVAFLCLTGCLIASLTIDTLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLKKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAGRVGRAASTGQLSFKHLKQESDDGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRGSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGGAETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAVVLIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVNKMKLALCVNHTINFQNYGDKSNRRSDLVLELKKIFEDLGIKYHLLPQAVQLNYASSAAGGVPLPPSQR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2367651 2372377 + MELO3C015507.2.1 Cme02g00283 320172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00283 768 MobiDBLite consensus disorder prediction 53 77 - -
Cme02g00283 768 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
Cme02g00283 768 PIRSF Memb_At2g17000 21 764 IPR016688 -
Cme02g00283 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 756 IPR016688 -
Cme02g00283 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 756 - -
Cme02g00283 768 Gene3D - 595 644 IPR023408 -
Cme02g00283 768 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00283 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101209209 1410.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00283 Cme-Chr2:2367651 Cme07g00186 Cme-Chr7:1260419 0 dispersed
Cme01g01219 Cme-Chr1:15415621 Cme02g00283 Cme-Chr2:2367651 0 transposed
Cme05g00802 Cme-Chr5:10208879 Cme02g00283 Cme-Chr2:2367651 0 transposed
Cme11g01254 Cme-Chr11:19297825 Cme02g00283 Cme-Chr2:2367651 0 transposed
Cme02g00283 Cme-Chr2:2367651 Cme07g00182 Cme-Chr7:1211909 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g105 . . . . Bpe01g00608 . . Bma11g00602 Cmo10g00779 Cmo11g00734 . . . . . Cpe04g01033 . . . . . . . . . . . . . . . . . . . Lsi06g00313 . . Cme02g00283 . Blo14g00566 . . . . . . . . . Cma10g00752 Cma11g00720 Car10g00675 . . . . . . . . . . . . . . . . . . Csa01g02964 Chy02g01258 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00283 Cme_Chr02 FPKM 8.105947 8.645624 0.257056 0.243235 0.0 0.0 0.0 0.0 0.0 0.0