Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00291 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCAGCTCAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGAACTCCTCTTCAGTATTAAAAGAAGTGCTTTGGACTCTCCTTTCACTTCTAAGCTCTTCCCACACCATCCTCAACCTGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAGATAGACCCAGAGCCAGGGAGGTGTAGAAGAACTGATGGGAAAAAATGGAGATGTTCAAAAGAGGCATATCCAGATTCAAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAGACAACAGCAACAAACGAAATAAACCACCTCTCAAATCCAACATTTTCTTCCTTAAACAGCAACTCATCCTTACTCTCCTATCGCCCCTTCCCTGCTCATCAAATATCTTCAACTCCTAATAATGGGAATGGTATATCAATCAAAGACACCAATACCCTCTTGCTTCTTGAACCTGGCTCTTACTCCGACAAAAACCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAAGAGGAAGTGGATGAGAAAGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTTCTCTGCTTCATCCATAGCTAGTTCACTGCAACTGACACCACTAACGATGAGTTCTTCTTCTCTATACCCAAAACCGAACAACAGCTCCTCTTTGCAGAGTGATCAATCCTCATTTTATCAGCTTCATCAGAGCGTCACAGAACCTTTGAAGCAACAAAAGAGAGACGAATCACAGAAGACTGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGACAGAGGATCATGGCTTGATTTTGCTGATAAACCATCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCCTAG 1005 42.79 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPELLFSIKRSALDSPFTSKLFPHHPQPVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNEINHLSNPTFSSLNSNSSLLSYRPFPAHQISSTPNNGNGISIKDTNTLLLLEPGSYSDKNPDYRSRYTYGLKEEVDEKVFFSQEPSEATGRADFSASSIASSLQLTPLTMSSSSLYPKPNNSSSLQSDQSSFYQLHQSVTEPLKQQKRDESQKTVHRFFDEWPPKDRGSWLDFADKPSNTSSVSTTRLSISIPTASNDFPIFRSKNP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2416702 2419169 - MELO3C015513.2.1 Cme02g00291 320180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00291 334 PANTHER GROWTH-REGULATING FACTOR 6 5 322 - -
Cme02g00291 334 Pfam WRC 77 118 IPR014977 -
Cme02g00291 334 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme02g00291 334 PANTHER - 5 322 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cme02g00291 334 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme02g00291 334 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cme02g00291 334 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00291 Cme-Chr2:2416702 Cme11g00639 Cme-Chr11:7385987 1.96E-10 dispersed
Cme04g01295 Cme-Chr4:18167269 Cme02g00291 Cme-Chr2:2416702 3.28E-68 transposed
Cme04g02423 Cme-Chr4:30870855 Cme02g00291 Cme-Chr2:2416702 8.02E-40 transposed
Cme02g00291 Cme-Chr2:2416702 Cme05g02069 Cme-Chr5:28919573 1.36E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40860 PF08879 WRC 1.10E-20 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00291 - - csv:101207344 647.506