Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00312 ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTTCAGTCCATTTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGGTGTTTGTTTCTTCCCATTCTCGTGCGCTCTTGAAGAAACCCTCCCTGAAGTTCATGCATGCAATTAGGGATATGGTTGTACGTGGGGCACCTGCCATTGCTATTTCAGCAGCTCTTGCTTTGGCAGCAGAAGTTTACAACTCAGCCCCTTTTAATGGGACACCCAATGATGCAGCGTCACTTATTGCAGATAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCGGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCCGGGGCCGCTGCTATTTCGTCTGAAGCCAGGAGTGTCTTCCAAGCTTTTATAGAGGCTGCTGAAGCAATGCTGGAGGATGACGTTGCTTCAAACAAAGCCATTGGGTTCTATGGAGCAAATTATATCCGTGATCAACAAAAATCACTGGAGAAGTTTTCCGTTCTAACGCATTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCAGGCGTGTTAGAAAGGGCATACTGTACTGAGACACGGCCCTTTAATCAAGGATCTCGACTCACTGCCTATGAGTTGGTTCATGAAAAGATACCTTCTACTCTCATAGCCGATTCTGCTGCCGCCGCCTTAATGAAATTTGGAAGAGTGAATGCTGTCGTAGTTGGGGCAGATCGTGTTGCTGCAAATGGTGATACCGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCGATGCATCACAAGATTCCATTCTTTGTCGCTGCACCATTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATTGTTATCGAGGAAAGGTCACCCAAAGAGTTGTTGAACTCTCGTGGAGGTCTCGGCGAGCAAGTTGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTTGACGTCACTCCTGCTCATCTGATTTGTGGAATCATAACAGAAAAGGGAGTCATCACGAAGGCGGGTTCTGATTCTTTCAACATAAAGGAGTTTGTTCAAAAGACAGCAGGGCCTTCCACATAG 1146 46.68 MALDSNNGGEVGVDNSLQSICYKRGSLRLLDQVFVSSHSRALLKKPSLKFMHAIRDMVVRGAPAIAISAALALAAEVYNSAPFNGTPNDAASLIADKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEARSVFQAFIEAAEAMLEDDVASNKAIGFYGANYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLICGIITEKGVITKAGSDSFNIKEFVQKTAGPST 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2577044 2581579 - MELO3C015531.2.1 Cme02g00312 320201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00312 381 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 361 IPR037171 -
Cme02g00312 381 Gene3D - 173 376 IPR042529 -
Cme02g00312 381 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 374 - -
Cme02g00312 381 Gene3D - 15 172 IPR027363 -
Cme02g00312 381 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237
Cme02g00312 381 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 367 IPR005251 -
Cme02g00312 381 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 374 - -
Cme02g00312 381 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 50 361 IPR011559 GO:0044249
Cme02g00312 381 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00312 Cme-Chr2:2577044 Cme09g01157 Cme-Chr9:16221802 2.45E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00312 K08963 - csv:101210526 661.759