Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00326 ATGGCGGCAGCTCAATTTACTGGGTCTTTAATTTCCTCGAGGAATTTGCTGCCTTCTTTCAATGGCCTTCGTCCTTCTTCTGTGAAATTCTCTCCTTCTGCTAACCATGTTCGAGTTGGGGGTTTGGCTAACAGATCTTTCACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCGACAACAGCTCAGACAAAACCCCAAGGAGGGGAGGTAGTTGCGGTTGGTGAAGGCAAGACAATTGGAAATACTAAAGTAGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCTAAGTATGCTGGAACTGAATTAGAGTTCAATGGTTCAAAGCATCTTATCCTGAAGGAAGATGATATAGTTGGTATACTAGAAACAGACGACGCTAAAGATCTTCAGCCCCTAAACGACAGGGTTTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCTGGAGGTTTATTGTTAACAGAGGCAACAAAAGAGAAGCCGTCCATCGGAACGGTGATCGCAGTTGGTCCGGGTCATCTGGACGAAGAAGGCAACAGGAAACCGCTAACCGTTGCAGTGGGAAACAACGTGATGTACTCGAAGTATGCAGGGAACGAATTCAAGGGCAAAGATGGATCTGATTACATTGCTTTGAGGGCTTCAGACTTGATTGCAGTGCTATCTTAG 771 45.27 MAAAQFTGSLISSRNLLPSFNGLRPSSVKFSPSANHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQTKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGHLDEEGNRKPLTVAVGNNVMYSKYAGNEFKGKDGSDYIALRASDLIAVLS 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2668999 2671623 + MELO3C015544.2.1 Cme02g00326 320215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00326 256 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 ProSitePatterns Chaperonins cpn10 signature. 65 89 IPR018369 GO:0005524|GO:0006457
Cme02g00326 256 PIRSF Cpn21 1 256 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cme02g00326 256 CDD cpn10 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 Hamap Co-chaperonin GroES [groES]. 64 156 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 SMART Cpn10_2 162 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 SMART Cpn10_2 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 Gene3D GroES chaperonin 158 256 IPR037124 GO:0006457
Cme02g00326 256 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457
Cme02g00326 256 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 256 - -
Cme02g00326 256 PRINTS 10kDa chaperonin signature 65 80 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 PRINTS 10kDa chaperonin signature 87 108 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 PRINTS 10kDa chaperonin signature 121 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 PRINTS 10kDa chaperonin signature 142 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 ProSitePatterns Chaperonins cpn10 signature. 163 187 IPR018369 GO:0005524|GO:0006457
Cme02g00326 256 SUPERFAMILY GroES-like 162 255 IPR011032 -
Cme02g00326 256 SUPERFAMILY GroES-like 63 156 IPR011032 -
Cme02g00326 256 Hamap Co-chaperonin GroES [groES]. 162 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 CDD cpn10 163 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 Pfam Chaperonin 10 Kd subunit 163 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cme02g00326 256 Pfam Chaperonin 10 Kd subunit 65 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00326 Cme-Chr2:2668999 Cme08g01421 Cme-Chr8:12518129 3.33E-07 dispersed
Cme02g00326 Cme-Chr2:2668999 Cme06g00340 Cme-Chr6:2103798 1.96E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00326 K04078 - csv:101212396 476.863