Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00333 ATGTTTCGGCCGACCGTTGCTTCATCTTTTTCGGCGACGGTGGCGTTGGCATTGGCGGTGATGTTCCAACTCATAATCCTAATAACTATTCCGTCCACCGTCCTCGTCGAAGCTCGCACGAAAACAATTCCGGCAGACTCGTCGAAGCTGGACGAATGGATCGCACACAACATGAGAGAATACAACGATCGTAAGATGAACGAGACAGGAATCAAGGCGCTGGACCGGCGGCTGGCTGAGGCGGAGGATTGCGTTCGATTAATCACCGTTAGAAAAGACGGACGAGGAAATTTCTCGACCATCACTGAAGCGATCGAAAGCATTCCGTCAGGAAATCGGCGGCGAGTGGTGGTGTGGATCGGAGGTGGAGTTTATAGAGAGAAAATTACGATCGATGCTTCCAAGCCGTTTGTGACTTTGTATGGTCAGAAAGGAAAACGGCCAGTGATCACATTCGACGGTACGGCGTCGGAGTTTGGTACCGTTAAGAGTGCTACGGTGGCGGTGGAATCGGATTATTTCGTTGCCGTCAATCTTACGTTTGTGAATTCAGCTCCAATGCCAGAACTAGGAGGAACGGGAGGGCAAGCAGTGGCGATGAGGATATCTGGGGATAAGGCAGCATTCCATGAGTGTCATTTCATAGGCTTTCAAGACACTTTATGTGATGACAGAGGCAGACATTTTTTCAGGGATTGTTACATCCAAGGCACTGTGGACTTCATCTTTGGAAATGGCAAATCTCTCTACTTGAAAACCACAATAAACTCAGTGGCAGAAGGGATAGGAGTGATAACAGCTCAAGCAAGGGAAGATGCCACAGATGAAAGTGGTTTCACATTTGCATATTGCAACATAACAGGAACGGGAAACACTTATTTAGGAAGAGCTTGGAAAGAGAGGACTCGTGTTGTTTTTGCTTACACATACATGGGAACTCTCATCAACACAGAAGGATGGTCTGACAAAATGCATGGAAGCCAACCTAGAAAGAGTATGTACTACGGAGAGTACAAATGCAAGGGACCAGGCGCGACTTCGTCTGGTCGAGTGAAGTATGCCAGAATACTCTCGGACGTAGAAGCGAAGGCGTTTTTGAGTATGACATACATTCATGGAAACAAATGGCTTCTACCACCCCCCGATCTTTCTTTCTCCCCTTCTAAACCCAACATCTTCCATTAA 1185 47.43 MFRPTVASSFSATVALALAVMFQLIILITIPSTVLVEARTKTIPADSSKLDEWIAHNMREYNDRKMNETGIKALDRRLAEAEDCVRLITVRKDGRGNFSTITEAIESIPSGNRRRVVVWIGGGVYREKITIDASKPFVTLYGQKGKRPVITFDGTASEFGTVKSATVAVESDYFVAVNLTFVNSAPMPELGGTGGQAVAMRISGDKAAFHECHFIGFQDTLCDDRGRHFFRDCYIQGTVDFIFGNGKSLYLKTTINSVAEGIGVITAQAREDATDESGFTFAYCNITGTGNTYLGRAWKERTRVVFAYTYMGTLINTEGWSDKMHGSQPRKSMYYGEYKCKGPGATSSGRVKYARILSDVEAKAFLSMTYIHGNKWLLPPPDLSFSPSKPNIFH 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2731403 2736273 + MELO3C015550.2.1 Cme02g00333 320222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00333 394 Gene3D - 83 380 IPR012334 -
Cme02g00333 394 SUPERFAMILY Pectin lyase-like 87 378 IPR011050 -
Cme02g00333 394 PANTHER PECTINESTERASE 21 382 - -
Cme02g00333 394 Pfam Pectinesterase 88 374 IPR000070 GO:0030599|GO:0042545
Cme02g00333 394 ProSitePatterns Pectinesterase signature 2. 235 244 IPR033131 -
Cme02g00333 394 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 21 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02379 Cme-Chr1:32176383 Cme02g00333 Cme-Chr2:2731403 2.07E-83 dispersed
Cme02g00333 Cme-Chr2:2731403 Cme05g00222 Cme-Chr5:1569834 7.34E-135 dispersed
Cme11g00120 Cme-Chr11:1132774 Cme02g00333 Cme-Chr2:2731403 5.61E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00333 K01051 - csv:101214012 752.281