Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00470 TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCCTCTACTTTAATCCCACTTCTCTTCCAACCCATTTCCCCTTCACATCCACCACCATGGAAGACGAAGCTTCCTCCAGTTTACTTTCACATATCAAGAATCCTATCCTAACAGAGGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCCAAGCGCCCGAGATTGGACAATGATCTTAATGATGTTATAGCCGTCGGAAAATTCAAAGGCGTTGTACCGCAACAGAATGGGCGTTGGGGAGCACAAATCTACGCGAATCATCAGAGGATTTGGCTTGGTACCTTCAAAACAGAGAAAGACGCTGCTATGGCTTATGATAGCGCCGCTATCAAGCTTCGAACTAGAGATTCTCACCGGAATTTCCCTTGGACTCGTCGAACAATCGAGGAACCTAATTTTCAAGTCAAATTCTCTACAGATGCCGTTTTGAGTATGATCAAAGACGGATCGTATTACTCCAAATTTTCCGCTTATTTACGAACACGATCACAAATTCACGACACGAATTTACAGAATCCTAAAAAACTCGACAATGGCGATGGCGATAGCCTTTTCTCTTGTAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGGAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCTGTGAAACATTTCCCGTACATCAGCGAAAGCGCAGAGGTGAACGGCGACGATATCGAAATCGTGTTCTACGATACGTCGATGAAGACATGGAAGTTCCGATACTGTTATTGGAGGAGTAGCCAGAGTTTCGTGTTTACTAGAGGGTGGAATCGCTTCGTGAAGGAGAAGAAACTAAAGGCCAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGATGAGAATGGCGGATCATTGAACTTCATTGACGTAATCTACAAGAAATCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTCAAGAATGAGAAAATATTGGAGAGGGAAGAATTAAGGCAAAATCAGGAGAAGGATTATGAGAAGATGAAGAAGGAAATTTTGAGCTTTGAATTGAATCGTAATGATAAGAAAGTTGGGGAAAAGCGAGTCAGACTATTTGGAGTGCATATTAATTGA 1185 42.03 FFFFFFFFFFFFFFFFLFFLYFNPTSLPTHFPFTSTTMEDEASSSLLSHIKNPILTEEVSDSNFTYYAIPEAKRPRLDNDLNDVIAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQVKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDTNLQNPKKLDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEVNGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGSLNFIDVIYKKSEDDQSESSCLAAEKESVKNEKILEREELRQNQEKDYEKMKKEILSFELNRNDKKVGEKRVRLFGVHIN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4367391 4368575 + MELO3C015667.2.1 Cme02g00470 320359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00470 394 ProSiteProfiles AP2/ERF domain profile. 89 144 IPR001471 GO:0003700|GO:0006355
Cme02g00470 394 Pfam AP2 domain 89 136 IPR001471 GO:0003700|GO:0006355
Cme02g00470 394 SMART B3_2 213 312 IPR003340 GO:0003677
Cme02g00470 394 Pfam B3 DNA binding domain 213 303 IPR003340 GO:0003677
Cme02g00470 394 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 53 394 IPR044800 GO:0003700
Cme02g00470 394 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 53 394 - -
Cme02g00470 394 SUPERFAMILY DNA-binding domain 89 145 IPR016177 GO:0003677
Cme02g00470 394 Gene3D - 202 333 IPR015300 -
Cme02g00470 394 CDD B3_DNA 211 302 IPR003340 GO:0003677
Cme02g00470 394 ProSiteProfiles B3 DNA-binding domain profile. 213 326 IPR003340 GO:0003677
Cme02g00470 394 SMART rav1_2 89 150 IPR001471 GO:0003700|GO:0006355
Cme02g00470 394 Gene3D AP2/ERF domain 89 145 IPR036955 GO:0003700|GO:0006355
Cme02g00470 394 CDD AP2 89 146 IPR001471 GO:0003700|GO:0006355
Cme02g00470 394 SUPERFAMILY DNA-binding pseudobarrel domain 211 306 IPR015300 -
Cme02g00470 394 Coils Coil 337 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00470 Cme-Chr2:4367391 Cme02g01073 Cme-Chr2:15752452 4.53E-104 dispersed
Cme02g00470 Cme-Chr2:4367391 Cme09g01901 Cme-Chr9:23146679 9.34E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40867 PF02362 B3 1.30E-26 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00470 K09287 - csv:101219913 690.649