Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00537 TGTTTATGTTTTTATGTCTCTTGCAGCTGCAATTACTTTTTACTCCCTGTACCTGCTAAAGTAGAGGTTGAAGAAAACTTTTCTCTAAAGAAAGAGACTAAAGAGTTTAAAAGCACCCCGGCTACCTGTGCAATTTGGTTAGATGGGAGGGTTGAAGGTATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGATCCAAATGGTGCACCATCGACGAGTATCTATTATGAACCCTGGTGGCGTGGCATGGGGTACAATACTTTTCCATTACCTGTGGTTGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCTAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATACTCGGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTCTGACGCAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCTTATCAGGATCCATATTATGGAGGAATGATGGCCTTCTATGGTCATCAGCCCTTGGGCTATCCCATGGTTGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCAAAGCAATACCAGGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAATCGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGAAGTAGTGGAGGCCGTTTTGCAAAGAAAAGCGAAGCTGACGGAAAAGAAAAGCATTCTGATAAAGTAAGCGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAAAGGAAGCTCCTTGATGAACAAGGCCTCTGAGTAG 969 44.38 CLCFYVSCSCNYFLLPVPAKVEVEENFSLKKETKEFKSTPATCAIWLDGRVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5584154 5587847 - MELO3C015196.2.1 Cme02g00537 320426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00537 322 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 84 312 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 Gene3D - 224 286 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 135 153 - -
Cme02g00537 322 ProSitePatterns NF-YA/HAP2 subunit signature. 229 249 IPR018362 GO:0003677|GO:0016602
Cme02g00537 322 MobiDBLite consensus disorder prediction 303 322 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 99 120 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 259 278 - -
Cme02g00537 322 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 227 281 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 MobiDBLite consensus disorder prediction 99 153 - -
Cme02g00537 322 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 84 312 - -
Cme02g00537 322 SMART cbf3 223 284 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 ProSiteProfiles NF-YA/HAP2 family profile. 224 284 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 MobiDBLite consensus disorder prediction 279 302 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 249 322 - -
Cme02g00537 322 PRINTS CCAAT-binding transcription factor subunit B signature 227 249 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 PRINTS CCAAT-binding transcription factor subunit B signature 258 281 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00537 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212860 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00537 Cme-Chr2:5584154 Cme05g00165 Cme-Chr5:1122899 9.39E-93 dispersed
Cme01g02466 Cme-Chr1:32840431 Cme02g00537 Cme-Chr2:5584154 1.87E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00165 . 1 271 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.4 2.1e-54 209.5
Cme05g00165 . 105 341 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.3 9.6e-48 187.6
Cme02g00537 . 51 285 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 1.2e-45 180.6
Cme08g00086 . 1 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 52.5 3.9e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40871 PF02045 CBFB_NFYA 5.30E-25 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00537 Cme_Chr02 FPKM 2.068906 1.67137 5.847858 6.187446 4.718447 4.559246 3.444135 6.741678 6.948915 6.024297