Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00537 TGTTTATGTTTTTATGTCTCTTGCAGCTGCAATTACTTTTTACTCCCTGTACCTGCTAAAGTAGAGGTTGAAGAAAACTTTTCTCTAAAGAAAGAGACTAAAGAGTTTAAAAGCACCCCGGCTACCTGTGCAATTTGGTTAGATGGGAGGGTTGAAGGTATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGATCCAAATGGTGCACCATCGACGAGTATCTATTATGAACCCTGGTGGCGTGGCATGGGGTACAATACTTTTCCATTACCTGTGGTTGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCTAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATACTCGGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTCTGACGCAGTCTACACAACTCGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCTTATCAGGATCCATATTATGGAGGAATGATGGCCTTCTATGGTCATCAGCCCTTGGGCTATCCCATGGTTGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCAAAGCAATACCAGGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAATCGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGAAGTAGTGGAGGCCGTTTTGCAAAGAAAAGCGAAGCTGACGGAAAAGAAAAGCATTCTGATAAAGTAAGCGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAAAGGAAGCTCCTTGATGAACAAGGCCTCTGAGTAG 969 44.38 CLCFYVSCSCNYFLLPVPAKVEVEENFSLKKETKEFKSTPATCAIWLDGRVEGMQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDTRKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRSRSSGGRFAKKSEADGKEKHSDKVSESGYRLNDGSEQQKGSSLMNKASE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5584154 5587847 - MELO3C015196.2.1 Cme02g00537 320426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00537 322 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 84 312 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 Gene3D - 224 286 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 135 153 - -
Cme02g00537 322 ProSitePatterns NF-YA/HAP2 subunit signature. 229 249 IPR018362 GO:0003677|GO:0016602
Cme02g00537 322 MobiDBLite consensus disorder prediction 303 322 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 99 120 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 259 278 - -
Cme02g00537 322 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 227 281 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 MobiDBLite consensus disorder prediction 99 153 - -
Cme02g00537 322 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 84 312 - -
Cme02g00537 322 SMART cbf3 223 284 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 ProSiteProfiles NF-YA/HAP2 family profile. 224 284 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 MobiDBLite consensus disorder prediction 279 302 - -
Cme02g00537 322 MobiDBLite consensus disorder prediction 249 322 - -
Cme02g00537 322 PRINTS CCAAT-binding transcription factor subunit B signature 227 249 IPR001289 GO:0003700|GO:0006355
Cme02g00537 322 PRINTS CCAAT-binding transcription factor subunit B signature 258 281 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00537 Cme-Chr2:5584154 Cme05g00165 Cme-Chr5:1122899 9.39E-93 dispersed
Cme01g02466 Cme-Chr1:32840431 Cme02g00537 Cme-Chr2:5584154 1.87E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40871 PF02045 CBFB_NFYA 5.30E-25 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00537 K08064 - csv:101212860 500.745