Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00722 ATGTCTACAGAAGACGAGACTGAGCTCCAAGAGACTCTGAAAATGTTTCCAACTGGCGCCATTTTGATTGAAGGCACTGTGTTGAATAACAAGGATTCATCGGCGGATCGTGATTTCAAGGTTTTCCCTGGGATGGAACTTTTGGTTTTGAGGTATTTTTCTTTGTTCTTCGTCTTGTCGGTTTGTGTACTGCATTTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTAGAATTGAAAGAATCTCTTCACGCTGGGAACTCGCTTCCATGGCGAGGAAGGTCTTTCTGCCACTGGCAAGGAGTTAAAGAATGCGCGAATGGGCGGGTAACTAAGCTTGTTTTGGAGCATCTAAATCTATCTGGTGTTCTTAACCACAAGATTTTGAATCGTTTAGATCAGCTTCGTGTTCTCAGTTTCAAAGGAAATTCGCTTTCCGGTCAAATCCCTGATCTCTCGGGTCTCGTTAATCTAAAATCCCTCTATCTAAGCGACAACAACTTTTCCGGCGAGTTTCCGAGTTCCATCTCCAATCTCCACCGCTTGAAGGTCGTCGTTCTTTCCGGTAACAAAATATCTGGTCCCATTCCAGAAACATTGCTTAAACTCCGGCGTCTCTATGTTCTACACTTGCAAGACAACCAACTCACCGGCTCCATCCCTCCTTTCAACCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCACCTCTCGGGCGACATCCCAGTAACCCCCACCTTAGCCCGATTCAATGTCTCGTCATTTTCCGGCAACCTAGAACTTTGCGGAGAACAAGTTCAAAACCCTTGTGGAAATATTTCCGTTGCGCCATCATTAAGTCCCTCTTTTCCACTAATCCCTGGCTCAAGCTCGTCTTCAAGACGACACAAATTGGTCAAGATAATAGCTGGAAGTGTTGGTGGGGAAAGAAAAAGCCTATCGGAGGTTAGAAACAAAGGAATTGGAGAGGAGGGGGTGGAGGAAACACCTGGAACTGCCGGAGGTTGCGGTGGTGGTGGCGGAGGAGGTAATAACGGGGGAAAACAAGGGGGGTTTTCGTGGGAAAGTGAAGGACTAGGGAGTCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGTTTGGAAGATTTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATTGGAAGCACATACAAAGCAGTAATGGAATCTGGGTATATTGTGACAGTGAAGAGGCTGAAGGATTCAAGGTACCCACGAGCAGAGGAATTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCTAATTTGGTCCCTCTTAGGGCATATTTCCAGGCCAAGGAGGAACGCTTGCTCGTATACGATTATTTCCCCAATGGCAGTCTCTTCTCTCTCATCCATGGATCAAGAACTTCTGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTAAAAATCGCGGAAGACTTGGCCAATGGTTTGCTCTACATCCACCAGAACCCAGGCTCAACGCATGGAAACCTCAAATCCTCAAACGTACTATTAGGATCTGATTTCGAATCCTGTCTTACTGATTACGGTCTTAACTTATTCCGAGATCCTGACTCGCTCGAAGAACCCAGTGCAACGTCACTCTTTTACCGAGCTCCCGAATGCCGCGACATACGTAAGCCAACCACCCAACAAGCAGATGTCTATAGTTTTGGTGTTCTTCTATTGGAGCTTCTCACAGGCAAAACACCATTCCAAGATCTTGTTCAAGAACACGGTTCTGACATTCCCAAGTGGGTTAGTTCAGTTAGAGAAGAGGAGACAGAGTCTGGGGACGATCCCACGTCTGGGAACGAGGCGTCAGAAGAGAAACTTCAAGCTCTTTTGAATATAGCAATGGCTTGTGTTTCGCTTATGCCTCAAAACCGACCGACAATGAGGGAAGTACTAAAGATGATAAGAGATACAAGAGCCGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCGGGGAGATGGTCTGATATTGTGCAGAGTTTGCCAAGGGAAGAACATTTAAGCATTTGA 2061 46.92 MSTEDETELQETLKMFPTGAILIEGTVLNNKDSSADRDFKVFPGMELLVLRYFSLFFVLSVCVLHLVRAGDAEALLELKESLHAGNSLPWRGRSFCHWQGVKECANGRVTKLVLEHLNLSGVLNHKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISNLHRLKVVVLSGNKISGPIPETLLKLRRLYVLHLQDNQLTGSIPPFNQTSLRFFNVSNNHLSGDIPVTPTLARFNVSSFSGNLELCGEQVQNPCGNISVAPSLSPSFPLIPGSSSSSRRHKLVKIIAGSVGGERKSLSEVRNKGIGEEGVEETPGTAGGCGGGGGGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDSRYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGSTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEEPSATSLFYRAPECRDIRKPTTQQADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVSSVREEETESGDDPTSGNEASEEKLQALLNIAMACVSLMPQNRPTMREVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8728491 8734423 - MELO3C014984.2.1 Cme02g00722 320611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00722 686 Gene3D Ribonuclease Inhibitor 224 272 IPR032675 -
Cme02g00722 686 ProSiteProfiles Protein kinase domain profile. 381 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00722 686 MobiDBLite consensus disorder prediction 657 671 - -
Cme02g00722 686 MobiDBLite consensus disorder prediction 657 686 - -
Cme02g00722 686 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Cme02g00722 686 Pfam Protein kinase domain 384 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00722 686 Gene3D Ribonuclease Inhibitor 69 223 IPR032675 -
Cme02g00722 686 MobiDBLite consensus disorder prediction 324 350 - -
Cme02g00722 686 Pfam Leucine rich repeat N-terminal domain 70 101 IPR013210 -
Cme02g00722 686 SUPERFAMILY Protein kinase-like (PK-like) 385 659 IPR011009 -
Cme02g00722 686 MobiDBLite consensus disorder prediction 596 617 - -
Cme02g00722 686 Gene3D Phosphorylase Kinase; domain 1 364 456 - -
Cme02g00722 686 Gene3D Transferase(Phosphotransferase) domain 1 457 672 - -
Cme02g00722 686 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 56 676 - -
Cme02g00722 686 SUPERFAMILY L domain-like 70 262 - -
Cme02g00722 686 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 56 676 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00722 Cme-Chr2:8728491 Cme08g00588 Cme-Chr8:3748630 9.79E-154 dispersed
Cme02g00722 Cme-Chr2:8728491 Cme05g01954 Cme-Chr5:28090976 6.75E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64678 PF00069 Pkinase 4.80E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00722 - - csv:101209119 1196.8