Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00821 ATGGAAGAAGTTGCTGTTCCTCCATATTTTATTTGCCCAATTTCGTTACAAATCATGAAAGATCCAGTTACAGCCACCACTGGAATTACTTATGATCGTGAAAGTATTGAGAATTGGTTTTTGACCTCTAAAGATGCAATCTTTTGCCCTCTCACCAAGCAATCTTTGACCAAAGCTTCCGATTTGACACCAAACCACACGCTTCGTCGTCTCATTAAGTCTTGGATGGTTGAGAATGCTTCCCCCGGTGGTGGAGATGATGAATTTCTAACTCCTAGCCCACTTTTAGACAAGACCCGTCTTCGAAAGCTCTTGCGGGAGGTTGCTGTCGCTTCCGATGAGCGCCTTCGCATTGACGCCGTGAAGAAGCTTCATGCTTTGGCTATTGAAAGTGACACGGCAAGTCGAGGCCGTATGGAGGAAGTCGGCGTGGCGAAGGGGATGGTCTTGTTTGTTATAAGACGTTTTAGGGAAGGGAGAATTGGTGGACTTGAGGAAGCTTTGAAGATTCTTAGTCTACTTTCACATTATTCAATTTCTGAAATTAGGTTTCTTGAGTTTTTTGAATCATTGACTTGGGTTTTGGGTTTGGAGATGGAAAATCACACAATAATCAAAAGCTACGCCATTGAAGTGTTGAAGAAAGCAACCGATGTGGCTCCCTCCACCATTCTCACCCAAATAAACCTTGAGTTCTTCAAAAACATCACAAATCTCTTCAGAGAAAAGATCTCAAATTCATCTCTCAAAACAACACTCACAATGCTAATAAACATATGCCCCTGGGGACGAAACCGAGTCAAGCTTGTTGAAGTCGGGGCAGTTTTTGACCTAATCGAACTCGAGCTCGAGAAGCCAGAGAAGAACATAACTGAGCTCATTTTCAACCTCTTGGCCCACCTATGCTCCACGGCAGATGGGAGAGCAGAGCTCATCAGCCATGCGGGGGGCATCGCGGTGGTTTCGAAGAGAATACTTAGAGTTTCGATTGCAACAACCGATCGAGCTATTCAAATTCTATCGTTGATATCGAAACACTCCGCTAGGAAGGATGTTCTTTTGGAGATGTTGAGGGTTGGGGCAGTGTCAAAGCTTTGCATGATAATGCAATCTAATTGTGAGGGATTCTTGAAGGAGAAAGCTAGAGAGATTTTGAGAATGCATTCGAATGTGTGGAGTAATTCTCCATGTATTGGGGTTTATGTGATGACTAGAGACCCTAGATAG 1227 43.85 MEEVAVPPYFICPISLQIMKDPVTATTGITYDRESIENWFLTSKDAIFCPLTKQSLTKASDLTPNHTLRRLIKSWMVENASPGGGDDEFLTPSPLLDKTRLRKLLREVAVASDERLRIDAVKKLHALAIESDTASRGRMEEVGVAKGMVLFVIRRFREGRIGGLEEALKILSLLSHYSISEIRFLEFFESLTWVLGLEMENHTIIKSYAIEVLKKATDVAPSTILTQINLEFFKNITNLFREKISNSSLKTTLTMLINICPWGRNRVKLVEVGAVFDLIELELEKPEKNITELIFNLLAHLCSTADGRAELISHAGGIAVVSKRILRVSIATTDRAIQILSLISKHSARKDVLLEMLRVGAVSKLCMIMQSNCEGFLKEKAREILRMHSNVWSNSPCIGVYVMTRDPR 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10648510 10649864 + MELO3C015057.2.1 Cme02g00821 320710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00821 408 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Cme02g00821 408 PANTHER WDSAM1 PROTEIN 4 404 IPR045185 GO:0061630
Cme02g00821 408 CDD RING-Ubox_PUB 10 54 IPR045210 -
Cme02g00821 408 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Cme02g00821 408 Gene3D - 99 387 IPR011989 -
Cme02g00821 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 404 - -
Cme02g00821 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Cme02g00821 408 SUPERFAMILY ARM repeat 111 392 IPR016024 -
Cme02g00821 408 SUPERFAMILY RING/U-box 4 80 - -
Cme02g00821 408 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00821 Cme05g00240 CCT
Cme02g00821 Cme05g00240 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00821 Cme-Chr2:10648510 Cme05g00240 Cme-Chr5:1752969 6.04E-96 dispersed
Cme02g00821 Cme-Chr2:10648510 Cme02g00829 Cme-Chr2:10816684 2.50E-58 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00821 - - csv:101220900 729.554