Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00859 ATGGATCTCGAGCGAGAGGTTTTAGTGGGTATGTTGTTATTGTCATTTTGTATACCTGGGTTCTGCAATTTGGTGTTTGAAGTTCAACATAAGTTTAAGGGTCGAGAGAGATCACTGAATGCGTTGAAATCTCATGATGTTCGTCGCCATGGTAGGCTTCTTTCTGTCATTGATCTCGAACTTGGTGGCAACGGACACCCTGCCGAAACAGGGTTATACTTCGCCAGAATTGGCATTGGAAGTCCTCCAAAAGATTACCATGTGCAAGTGGATACAGGGAGTGACATTTTATGGGTGAACTGTATCGGTTGCAGAAATTGTCCGAAGAAAAGTGATATTGGTGTAGAGTTGCAACTGTATAATCCGAAGAGCTCCAGCACTTCAAACTTGATTACTTGTGATCAACCATTTTGCTCGGCTACATATGACGCTCCAATCCCAGGTTGTAAGCCAGATCTACTCTGCCAATATAAAGTTATCTATGGGGATGGAAGTGCAACAGCTGGATATTTTGTGAAGGATTATATTCAACTCCAACGAGCTGTTGGAAACCATAAAACTTCTGTAACTAATGGCAGTGTAATATTTGGGTGTGGAGCTAACCAATCTGGGGAGCTTGGTTCGTCATCCGAAGCACTTGATGGAATACTTGGTTTTGGACAGGCAAATTCATCTATGCTTTCTCAGTTGGCTGCAACTGGGAAGGTCAAAAAGACTTTTGCACACTGCTTGGATAGTATATCAGGGGGTGGGATTTTTGCCATTGGAGAAGTAGTTGAACCAAAATTGAAAACCACACCAGTGGTACCTAATCAGGCTCACTACAATGCTGTTCTAAATGAAGTTAAGGTAGGGGGCACTGCTCTTGATCTTCCTCTTGGACTGTTCGAAACTTCTTATAAAAGAGGAGCAATCATTGACAGTGGCACAACACTAGCTTATCTTCCCGAGAGCATTTACCTGCCATTAATGGACAAGATTTTGGGTGCCCAGCCTGATCTGAAGCTACGTACAGTTGATGATCAGTTTACTTGTTTTCTTTTTGATGGAAATGTGGACGACGGATTTCCTACAGTGACATTCAAATTCGAGGAGTCCCTAATCTTGACTGTTTACGCTCACGAGTATCTCTTTCAAATTCGGGATGATGTATGGTGTGTTGGGTGGCAAAATAGTGGAGCTCAATCCAAAGACGGAAAGGAAGTCACTCTCTTGGGAGACTTGGTTCTTCAAAACAAGTTGGTTTACTATAATCTTGAAAATCAGACCATTGGTTGGACTGAGTACAACTGCTCATCAGGCATAAAATTGAAAGATGTAAAATCAGGAGATGTTTACACAGTGGGAGCCCACAAACTGTCTTCAGCACATTCCCTTCTTGTCATTGGCAGATTACTTCCATTTTTATTAGCTTTTACTCTCTTTTTTATCCATTAG 1437 41.96 MDLEREVLVGMLLLSFCIPGFCNLVFEVQHKFKGRERSLNALKSHDVRRHGRLLSVIDLELGGNGHPAETGLYFARIGIGSPPKDYHVQVDTGSDILWVNCIGCRNCPKKSDIGVELQLYNPKSSSTSNLITCDQPFCSATYDAPIPGCKPDLLCQYKVIYGDGSATAGYFVKDYIQLQRAVGNHKTSVTNGSVIFGCGANQSGELGSSSEALDGILGFGQANSSMLSQLAATGKVKKTFAHCLDSISGGGIFAIGEVVEPKLKTTPVVPNQAHYNAVLNEVKVGGTALDLPLGLFETSYKRGAIIDSGTTLAYLPESIYLPLMDKILGAQPDLKLRTVDDQFTCFLFDGNVDDGFPTVTFKFEESLILTVYAHEYLFQIRDDVWCVGWQNSGAQSKDGKEVTLLGDLVLQNKLVYYNLENQTIGWTEYNCSSGIKLKDVKSGDVYTVGAHKLSSAHSLLVIGRLLPFLLAFTLFFIH 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11378519 11384524 + MELO3C010007.2.1 Cme02g00859 320748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00859 478 Pfam Xylanase inhibitor N-terminal 73 256 IPR032861 -
Cme02g00859 478 Pfam Xylanase inhibitor C-terminal 275 427 IPR032799 -
Cme02g00859 478 PRINTS Pepsin (A1) aspartic protease family signature 79 99 IPR001461 GO:0004190|GO:0006508
Cme02g00859 478 PRINTS Pepsin (A1) aspartic protease family signature 304 315 IPR001461 GO:0004190|GO:0006508
Cme02g00859 478 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
Cme02g00859 478 ProSiteProfiles Peptidase family A1 domain profile. 73 427 IPR033121 -
Cme02g00859 478 SUPERFAMILY Acid proteases 67 433 IPR021109 -
Cme02g00859 478 Gene3D Acid Proteases 64 257 IPR021109 -
Cme02g00859 478 PANTHER ASPARTYL PROTEASES 7 448 IPR001461 GO:0004190|GO:0006508
Cme02g00859 478 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 448 - -
Cme02g00859 478 CDD pepsin_A_like_plant 73 431 IPR034161 -
Cme02g00859 478 Gene3D Acid Proteases 258 435 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00859 - - - csv:101206508 924.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00859 Cme-Chr2:11378519 Cme05g00948 Cme-Chr5:13113053 0 dispersed
Cme09g00884 Cme-Chr9:12001455 Cme02g00859 Cme-Chr2:11378519 1.10E-15 dispersed
Cme12g01885 Cme-Chr12:25016381 Cme02g00859 Cme-Chr2:11378519 2.41E-32 dispersed
Cme02g00859 Cme-Chr2:11378519 Cme11g01865 Cme-Chr11:26841203 4.77E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001410 2 2 2 4 2 2 4 2 2 2 2 2 3 2 2 4 2 1 4 2 2 2 3 2 2 2 2 8 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00859 Cme_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0