Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00903 TATATATATGCAGGACCTTTCAATTTTGAGGAAGGAAATCCAAAGGGAACCCTACCCACCTTACATCTCAATCCTTACAGCTGGTCCAAGGTTTCAAATATTATATATTTGGATTCTCCTGCTGGGGTTGGCTTATCTTACTCAACAAACCACACTAATTACATAACTGGAGATCTTCAAACTGCTTCTGATACCCACACTTTCCTTCTCAAATGGTTTAAAGAATTTCCAGAGTTTGTTAAAAATCCATTTTACATAGCAGGAGAGTCTTATGCAGGCATCTATGTCCCTACACTTGCTTCCCAAGTTGTCAAAGGACTCAAAGATGGAGCTTTACCAATCATAAATTTAAAGGGTTACATGGTGGGGAATGGTGTGACGGACGAAAAGTTTGATGGCAATGCTCTTGTTCCCTTTGCACATGGCATGGCCCTCATCTCACACTCCATCTTTAAGGAAGCTGAAGCATCTTGTGGTGGAAATTACTTCGATCCTCAAACAGATGAGTGCTTTGACAAGCTTGACCAAATTGACCAGGCTCTGGAACGGTTAAACATATACGACATATTGGAGCCATGTTATCACTCACCAAACACAAAAATGAACACCAATTTACCACCTAGTTTTCAACAACTTGGGCAAACGGAGAAGACAACATTGGCGGTTAGGAAGCGGATGTTCGGCCGTGCTTGGCCATTCCGGGCACCGGTGCGCGATGGCATTGTCCCTCTTTGGCCTCAGCTAGCTCAGTCCCATGCTAGTACTCATGAATCCACTGTTCCATGTATGAACGATGAAGTTGCAACCATATGGTTGAATGACGAATCTGTAAGAGCAGCCATTCATGCAGAACCGCGAAGTGTAACAGGTCCATGGGAGCTATGTACACAGAGAATAAGTTACGATCATGATGCTGGAAGTATGATTCCTTATCACATCAACCTCACTTCTCAAGGTTATAGAGCCCTTATTTTCAGTGGAGACCATGATATGTGTGTGCCATATACTGGAAGCCAAGCATGGACTTCTTCAGTTGGTTACAAAATTGTTGATGAATGGAGGCCATGGTTCACCAATTCCCAAGTTGCTGGGTATTTACAAGGATATCAGCACAACCTCACTTTTCTCACCATAAAGGGAGCGGGACATACTGTGCCTGAGTACAAGCCAAGAGAAGCATTAGATTTCTATAGTCGATGGTTACATGGAAACTCAATTTAA 1221 42.92 YIYAGPFNFEEGNPKGTLPTLHLNPYSWSKVSNIIYLDSPAGVGLSYSTNHTNYITGDLQTASDTHTFLLKWFKEFPEFVKNPFYIAGESYAGIYVPTLASQVVKGLKDGALPIINLKGYMVGNGVTDEKFDGNALVPFAHGMALISHSIFKEAEASCGGNYFDPQTDECFDKLDQIDQALERLNIYDILEPCYHSPNTKMNTNLPPSFQQLGQTEKTTLAVRKRMFGRAWPFRAPVRDGIVPLWPQLAQSHASTHESTVPCMNDEVATIWLNDESVRAAIHAEPRSVTGPWELCTQRISYDHDAGSMIPYHINLTSQGYRALIFSGDHDMCVPYTGSQAWTSSVGYKIVDEWRPWFTNSQVAGYLQGYQHNLTFLTIKGAGHTVPEYKPREALDFYSRWLHGNSI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12364157 12375445 + MELO3C010046.2.1 Cme02g00903 320792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00903 406 Pfam Serine carboxypeptidase 5 403 IPR001563 GO:0004185|GO:0006508
Cme02g00903 406 ProSitePatterns Serine carboxypeptidases, histidine active site. 373 390 IPR033124 GO:0004185
Cme02g00903 406 SUPERFAMILY alpha/beta-Hydrolases 3 403 IPR029058 -
Cme02g00903 406 ProSitePatterns Serine carboxypeptidases, serine active site. 86 93 IPR018202 GO:0004185
Cme02g00903 406 Gene3D alpha/beta hydrolase 3 406 IPR029058 -
Cme02g00903 406 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 4 404 IPR001563 GO:0004185|GO:0006508
Cme02g00903 406 PRINTS Carboxypeptidase C serine protease (S10) family signature 37 47 IPR001563 GO:0004185|GO:0006508
Cme02g00903 406 PRINTS Carboxypeptidase C serine protease (S10) family signature 373 386 IPR001563 GO:0004185|GO:0006508
Cme02g00903 406 PRINTS Carboxypeptidase C serine protease (S10) family signature 24 36 IPR001563 GO:0004185|GO:0006508
Cme02g00903 406 PRINTS Carboxypeptidase C serine protease (S10) family signature 72 97 IPR001563 GO:0004185|GO:0006508
Cme02g00903 406 PANTHER CARBOXYPEPTIDASE 4 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00903 K16296 SCPL-I; serine carboxypeptidase-like clade I [EC:3.4.16.-] - csv:101209433 802.357
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01931 Cme-Chr1:27734168 Cme02g00903 Cme-Chr2:12364157 1.29E-133 dispersed
Cme02g00903 Cme-Chr2:12364157 Cme07g00275 Cme-Chr7:1792558 1.84E-90 dispersed
Cme02g00903 Cme-Chr2:12364157 Cme01g02421 Cme-Chr1:32496346 3.13E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g874 . . . . Bpe15g00448 . . . Cmo04g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00067 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00688 . . Cme02g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002964 2 3 2 2 2 1 1 1 1 2 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00903 Cme_Chr02 FPKM 3.987425 4.451201 1.593531 2.058949 6.072441 6.300228 7.613775 1.478552 1.181177 1.433167