Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00909 ATGGCCTTGGTTACCACCGCAGAAGTTTGTGATGCTAATCCACAACTCATTGTAAGTGGTGAACTTCGGGCCCTTGAACCAATTTTTCAGATATATGGTCGGCGCCAAGTATTTTCAGGACCAGTAGTCACACTGAAGGTGTTTGAAGACAATGTGTTGATTCGTGAGTTTCTCGAGGAGAAGGGTAACGGCAGAGTTCTTGTGGTGGATGGGGGCGGTAGCAAAAGGTGTGCAATATTGGGTGGCAATCCTGTTGTTCAAGCTCAAAACAATGGTTGGGCTGGTATAGTTGTGAATGGATGTGTTAGAGATGTGGATGAAATAAATGGTTGCGATATTGGGGTAAGGGCACTTGCGTCACATCCAATGAAAGCCTACAAAAAGCGGGTCGGAGAGAAGCACGTGCCGATAACTGTAGCTGGGACAAGGATCATGGATGGGGAATGGCTGTATGCAGATACTGATGGAATTCTAGTTTCACGAACCGAGTTGTCGGTTTAG 501 46.51 MALVTTAEVCDANPQLIVSGELRALEPIFQIYGRRQVFSGPVVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSKRCAILGGNPVVQAQNNGWAGIVVNGCVRDVDEINGCDIGVRALASHPMKAYKKRVGEKHVPITVAGTRIMDGEWLYADTDGILVSRTELSV 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12549829 12550640 + MELO3C010055.2.1 Cme02g00909 320798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00909 166 SUPERFAMILY RraA-like 4 164 IPR036704 -
Cme02g00909 166 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 4 166 - -
Cme02g00909 166 TIGRFAM NOT-MenG: RraA family 6 160 IPR010203 GO:0008428|GO:0051252
Cme02g00909 166 Pfam Aldolase/RraA 6 159 IPR005493 -
Cme02g00909 166 CDD RraA_family 7 160 IPR005493 -
Cme02g00909 166 Gene3D - 3 166 - -
Cme02g00909 166 PANTHER 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED 4 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00909 - - - csv:101210172 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00909 Cme-Chr2:12549829 Cme06g02712 Cme-Chr6:34327034 1.32E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01018 Cam03g1070 Cec03g1071 Cco03g1062 Clacu03g1041 Cmu03g1631 Cre03g1332 Lsi06g00694 . . Cme02g00909
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001787 2 3 2 2 2 2 3 2 2 2 3 2 3 2 1 3 2 1 2 2 2 4 2 2 2 2 1 5 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00909 Cme_Chr02 FPKM 12.579496 16.163908 2.808623 3.374219 8.629375 7.439599 8.850323 0.281024 0.0 0.0