Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00915 ATGAAGCTCCAAGTCGCCGACCACGATCTCAACGCCCTTCTTCTTCCTCCCCCTAACTTCTCCATGGTCGAAGACGGCATTTTCCGGTCCGGCTTCCCTCAGCCCTCCAATTTCCCCTTCCTCCGCAGCCTCAACCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCTGAGGAGAATTTGGAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATCGAAGGAAAAAAGGAGCCTTTCGTTTCAATTCCGAAGGATGCTATTCTTGAAGCACTAAAAATTCTAATTGATGTTAGGAATCATCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGGTCCCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACATCGGTGTTCGAGGAGTACCAGCGATTTGCAGGGATAAAATCGAGGGCAACGGATCTACAATTCATCGAGACATTCGACGTTGGGTCTCTGAGACAATGTGTTTACAGCATCATATACCAGTACCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAGAAAACTTGCAAAAGCCTCAAACAACAAAAGTTTAG 603 45.27 MKLQVADHDLNALLLPPPNFSMVEDGIFRSGFPQPSNFPFLRSLNLRSIIYLCPEPYPEENLEFLKANNIKLFQFKIEGKKEPFVSIPKDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGIKSRATDLQFIETFDVGSLRQCVYSIIYQYQGYSSNKRRLLYREENLQKPQTTKV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12679571 12681639 - MELO3C010061.2.1 Cme02g00915 320804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00915 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Cme02g00915 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Cme02g00915 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Cme02g00915 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Cme02g00915 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 11 183 - -
Cme02g00915 200 CDD PFA-DSP_Siw14 13 160 - -
Cme02g00915 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Cme02g00915 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Cme02g00915 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 173 IPR020422 GO:0006470|GO:0008138
Cme02g00915 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 159 IPR029021 -
Cme02g00915 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 183 - -
Cme02g00915 200 Pfam Tyrosine phosphatase family 14 162 IPR004861 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00915 Cme-Chr2:12679571 Cme05g00326 Cme-Chr5:2406592 2.72E-29 dispersed
Cme02g00915 Cme-Chr2:12679571 Cme11g01505 Cme-Chr11:22145118 2.48E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00915 K18045 - csv:101211082 392.119