Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00920 ATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCAGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGGGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCCACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCATTGCGTGGTTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCTAGGGCTTCATTTATTCCCAGTCCACGATGGCAAGGTCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGATCAGCTAGGATCGGTTTCGTCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTCGGTGCTGTTTGTCGATTTCATCACCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTGCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCAGCAGCATCATCAGCCAACGCCCCGGTTCAGCATTTGTTTGGGACGTCTTCGGGAACAACTGCACTAAACCTATCATCTGAGGGGCTAGTCGAAGCAGGATCTGCAAAGCCAAGGCGGCTATCAATCTCGGAGACTCGAGAAATGCCATCTGACGATGAAAATGATGCCGAGGGCTGA 1104 45.56 MNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSISETREMPSDDENDAEG 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12823681 12836910 + MELO3C010064.2.1 Cme02g00920 320809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00920 367 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Cme02g00920 367 MobiDBLite consensus disorder prediction 209 225 - -
Cme02g00920 367 PANTHER PROTEIN PHOSPHATASE RELATED 220 364 - -
Cme02g00920 367 PANTHER PROTEIN PHOSPHATASE RELATED 1 222 - -
Cme02g00920 367 SUPERFAMILY CCCH zinc finger 66 91 IPR036855 GO:0046872
Cme02g00920 367 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 220 364 - -
Cme02g00920 367 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 1 222 - -
Cme02g00920 367 Gene3D - 97 144 - -
Cme02g00920 367 MobiDBLite consensus disorder prediction 340 367 - -
Cme02g00920 367 Gene3D - 17 96 - -
Cme02g00920 367 ProSiteProfiles Zinc finger C3H1-type profile. 108 136 IPR000571 GO:0046872
Cme02g00920 367 SUPERFAMILY CCCH zinc finger 277 301 IPR036855 GO:0046872
Cme02g00920 367 Gene3D - 217 302 - -
Cme02g00920 367 SUPERFAMILY CCCH zinc finger 110 136 IPR036855 GO:0046872
Cme02g00920 367 SUPERFAMILY CCCH zinc finger 232 257 IPR036855 GO:0046872
Cme02g00920 367 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872
Cme02g00920 367 ProSiteProfiles Zinc finger C3H1-type profile. 62 90 IPR000571 GO:0046872
Cme02g00920 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
Cme02g00920 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 255 IPR000571 GO:0046872
Cme02g00920 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 135 IPR000571 GO:0046872
Cme02g00920 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 89 IPR000571 GO:0046872
Cme02g00920 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 19 44 IPR000571 GO:0046872
Cme02g00920 367 SUPERFAMILY CCCH zinc finger 22 45 IPR036855 GO:0046872
Cme02g00920 367 MobiDBLite consensus disorder prediction 209 228 - -
Cme02g00920 367 SMART c3hfinal6 228 255 IPR000571 GO:0046872
Cme02g00920 367 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Cme02g00920 367 SMART c3hfinal6 62 89 IPR000571 GO:0046872
Cme02g00920 367 SMART c3hfinal6 17 44 IPR000571 GO:0046872
Cme02g00920 367 SMART c3hfinal6 108 135 IPR000571 GO:0046872
Cme02g00920 367 ProSiteProfiles Zinc finger C3H1-type profile. 17 45 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01486 Cme-Chr1:19397689 Cme02g00920 Cme-Chr2:12823681 1.97E-25 dispersed
Cme02g00920 Cme-Chr2:12823681 Cme06g00709 Cme-Chr6:4618750 5.41E-102 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40884 PF00642 zf-CCCH 2.40E-10 CL0537 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00920 - - csv:101221929 780.785