Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00934 ATGGGGTTTGATGGGGTTTGTGGTCGGTGTTTGGCTGCGGTGTCAGAGGTGAAAAGGGAAATGATGGAGGAGTTTGGGGTTGGGAGTGATGATCAAAATGAGAATGGTGCTTGTGGATTTGCTGCCATTGTCGCTGTTGCTGCTGCCAGAATTGAAGATCGCTCCGATTTTGATGCCTTCTTCCAATGCTTGCCGGCTTTGGACGCTTTCAATTCAGTAGCGAAGGCCATAGTGGCGGCCATAGTGGTGGTGGTGGTTTTGCTACTCATCGTCCTTCTAGCAAAGCATGCCAGCAAGAAGAAGAAGAAGACCAAACCATCTGCCTCAAACGACACATCTACATGGTCGGGCCTGTATCGGTTTGCAAAGGAGGAGATCGACAGAGCGCTTGACTTCGGGAGCGAAAGGACAAGTCTAGGGCGGGGCAGTGCAGGGCAAGTGTACAAGGGAATACTGCCGAGCGGGCAGCTAGTAGCCATCAAGAAGATATTCCAGAGCAACACGTCGGATTCATTCATTCGAGAAGTTGAAGGTCTGTCTAGGGTTCGGCATCAAAATTTGGTGTGCTTATTAGGGTGCTGCATTGAGAATGGGGAACAATATCTTGTGTATGAGTATTGTGAACAAGGAAACTTGGCTCAACATCTCTTGAGGAAAGACACAGTACTATCATGGAAATCAAGAGTACAGATTTTGAGAGACTGTGCACTTGCATTGAGATATCTTCATCAACGTGTAGATGGCTGCATTGTCCATAGAGATATTAAGTTAACCAACATACTTTTGACTGAGAAAATGGAGCCGAAGCTATCAGATTTTGGGTTGGCAAGAATGTTGGGTATGGATGAAACAAAAGTATTCACAGATGTTAGAGGAACCATTGGCTATATGGATCCTGAATACATGAGCAATGCTAAGCTCACTTGTGCAAGTGATATTTATAGTTTTGGCATTGTGGCTCTTCAGCTCTTATCTGGTCAAAAGGTCATTGATTTGGATCTTGATGCACGAGATCAATTAACAAGAAAGGCAAAGGATGTAAACATGGGGTTAAGAGCGTTGAGTGATTTTGAAGACCCAAAATTAAAAGGGAACGTAAATAAAGCAGACTTTGAATCCATTTTACAAGTTGCTGTTCTTTGTGTGGCAAAATCAAGTAAAGGAAGACCCACAATTGACATTGTCTTTGAGGAATTGGACAAAGCTTGGCAAAATACTATCGCCAACGAGAGGGCAAAGCAAGAGATGAACTCACCAGCAACCTCATTGTCTAAGCCATGGGAGGCTGTTCCAGTGTGA 1299 44.5 MGFDGVCGRCLAAVSEVKREMMEEFGVGSDDQNENGACGFAAIVAVAAARIEDRSDFDAFFQCLPALDAFNSVAKAIVAAIVVVVVLLLIVLLAKHASKKKKKTKPSASNDTSTWSGLYRFAKEEIDRALDFGSERTSLGRGSAGQVYKGILPSGQLVAIKKIFQSNTSDSFIREVEGLSRVRHQNLVCLLGCCIENGEQYLVYEYCEQGNLAQHLLRKDTVLSWKSRVQILRDCALALRYLHQRVDGCIVHRDIKLTNILLTEKMEPKLSDFGLARMLGMDETKVFTDVRGTIGYMDPEYMSNAKLTCASDIYSFGIVALQLLSGQKVIDLDLDARDQLTRKAKDVNMGLRALSDFEDPKLKGNVNKADFESILQVAVLCVAKSSKGRPTIDIVFEELDKAWQNTIANERAKQEMNSPATSLSKPWEAVPV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13230987 13236931 - MELO3C029613.2.1 Cme02g00934 320823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00934 432 MobiDBLite consensus disorder prediction 412 432 - -
Cme02g00934 432 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 40 422 - -
Cme02g00934 432 SUPERFAMILY Protein kinase-like (PK-like) 108 399 IPR011009 -
Cme02g00934 432 Pfam Protein kinase domain 137 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00934 432 Gene3D Phosphorylase Kinase; domain 1 103 206 - -
Cme02g00934 432 ProSiteProfiles Protein kinase domain profile. 133 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g00934 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Cme02g00934 432 Gene3D Transferase(Phosphotransferase) domain 1 207 424 - -
Cme02g00934 432 PANTHER OS01G0750732 PROTEIN 40 422 - -
Cme02g00934 432 SMART serkin_6 133 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00934 - - - cmo:103487474 790.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00934 Cme-Chr2:13230987 Cme01g01754 Cme-Chr1:24605182 1.64E-56 dispersed
Cme02g00934 Cme-Chr2:13230987 Cme10g00543 Cme-Chr10:3464745 4.54E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01076 . . . . . . Lsi06g00730 . . Cme02g00934
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012648 0 0 0 1 0 1 1 1 1 2 1 1 1 1 2 1 1 2 0 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64679 PF00069 Pkinase 8.90E-47 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g00934 Cme_Chr02 FPKM 11.908695 11.142103 18.554646 19.015675 12.756313 10.806939 11.487957 14.46602 16.1842 16.10137