Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01000 ATGTTGATAACATTCAGAGAAGCTGCTGCAGCTTCTTCTTCTTCGCCCCTTTGCTTCACTCTCTCCACTCGATCACTTACCAATTCTAAGCGCTTTCCAAGACCTAGAATTTCACTCGCCCGTGCTTCCTTCTCTGTTCCGGGCAAGCCCAGTTCCATCAAATCCTGGAACCTTGGCCTCATTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGCATCCATCCTGATCTTTCTTCCGAATTAAGTAGTACATGGGAAAGTTTTCTTGGTTATTTTGGCCAAACATTTAACAGTGCTTCAAGCACAAAAAAAGATAAATCTCCATCAGCTCGTGGATTAGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCGTTGCCTGGAAAATTTCTACAGCTCTTGGGCTATTTAGCCCTTTCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTCGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGAGGAGGCATTGGTAGGCTGGGGATATGCTCCCTAGGCATTGTTCCCTTTATCAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGCGAAGCTGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTATACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTGACACTTGGCTCAGTCATAACAACGTACATAGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCTGCATCATCTCCTATTTACCGGCATCCTTTGGAAGGACCACTGCACAGGCATTCCAGGATGGTAATTATGTTGGATTGGTTGCTATCATGATCTCGTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGAAAAATCCCCCTCAATTATGCTTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCCTTCAAGGTAAATAGTTCCGGTGTAATGCCAATCATCTTCTCGACATCAACGTTGGCCCTTCCAGGTACTCTAGCTCGCTTCACAGGGTTATCGGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGGGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTTCTACAGTTGGATCCCGATGATGTGAGTGAGCAATTGAAGCGACAGGGTGCTTCAATTCCCCTCGTCCGCCCTGGAAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGCCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATTCTTGCTGCTGGTCCTGCGGTGATTGAACAGACAACACACTTGACAGCATTTCGAGGATTCGCAGGAACCTCTGTTCTTATTCTTGTTGGTTGTGCAACGGACACTGCCAGAAAGGTACAAGCTGAGATAATCTCCCAGAAGTACAAGAATATAGAGTTCTATGACATTGATAGGTATAATCCTTGA 1644 43.98 MLITFREAAAASSSSPLCFTLSTRSLTNSKRFPRPRISLARASFSVPGKPSSIKSWNLGLISNSSESSVFDPLGIHPDLSSELSSTWESFLGYFGQTFNSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTCIISYLPASFGRTTAQAFQDGNYVGLVAIMISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYNP 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14963093 14967100 + MELO3C010164.2.1 Cme02g01000 320889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01000 547 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 137 534 IPR002208 GO:0015031|GO:0016020
Cme02g01000 547 Pfam SecY 190 521 IPR002208 GO:0015031|GO:0016020
Cme02g01000 547 Hamap Protein translocase subunit SecY [secY]. 126 538 IPR026593 -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 138 156 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 188 208 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 230 253 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 262 287 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 288 311 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 379 398 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 418 440 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 473 491 - -
Cme02g01000 547 PRINTS Preprotein translocase SecY subunit signature 507 525 - -
Cme02g01000 547 Gene3D SecY subunit domain 129 534 IPR023201 -
Cme02g01000 547 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 55 543 - -
Cme02g01000 547 ProSitePatterns Protein secY signature 2. 281 298 IPR030659 -
Cme02g01000 547 SUPERFAMILY Preprotein translocase SecY subunit 130 528 IPR023201 -
Cme02g01000 547 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 55 543 IPR002208 GO:0015031|GO:0016020
Cme02g01000 547 ProSitePatterns Protein secY signature 1. 189 208 IPR030659 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01000 K10956 - csv:101222431 1003.82