Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01001 ATGCTTGGCTTTGTTGTTGAGAAAATGTTTTATTCTGATCACAAAAAACATAAGAAATCTGCCATTGGAAGCAGCAATGAAGCAGTGCAACTTGAGAAGTCACCGTCAAAATACTATATTCCCTCATCAACGTCAACGTTTTTAATACCTGACAATGGACTAGGAGGAGGCAAAAGTAAATTGACAGAAACAATTAAAACGGAGAAGTCCAAGGTGTTTCCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACCGGATGTTCATTTGCTCGTGCTTATTAGCTCTCTTTGTTGACCCACTATATCTTTACTTGCCTGCTTTGAATGGGAATGGGGTATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGGACTGTTGCAGACTTTTTCTACCTTTTGCACATGATTATAAAATTCAGAACAGCTTATGTTGCTCCTAGCTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGACTTATAACTGCCTCTTCCTTGCAGTTTGTCATCTGGTTCATCATACCTGCAACAAGAAGTCGTCTAACTGATCACAAAAACAATGCACTTGCGCTTATTGTTCTTCTTCAATATATTCCAAGATTGTATTTGATTTTCCCACTTAGTTCAGAAATCATCAAAGCAAATGGTGTTGTTACAAAAACAGCATGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCCAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCGTGCTGGAAGTCATTTTGTAGGAAGAAGGAATATAATCCTCTAGAGTGCAATCTAACTTTTTTTGATTGCGATACATTTAACAGTAATGCTCGCAAAACATGGGCAAACAGTACACTTGTTTTTGGAAAATGTGGCACTGATGGAGGAGATTTCAAGTATGGCATTTTCGAGAATGCAATGTCGAAGAATGTTGTCTCTTCAAACTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAAAACTTGGAAACGACGACGTTCATTGGCGAGACATTGTTTGCTGTGCTCATTGCGATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACTGTGAGGCTTGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTACAATATAAGTGGGTGGCAACCAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACTTATGTCTAGATCTTGTCCGACGAGTTCCTTTCTTCGCGCAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCGGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTCAACTCCATAACATTACGTCCCGGGGACTTCTGTGGGGAGGAACTGCTTTCTTGGGCCTTGCATCCAAAATCCACCACCAACTTGCCCTCCTCAACTAGAACAGTGAAGGCGCTCAATGAAGTTGAAGCTTTTGCACTCCGGGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCATAGTAAAAAATTGCAGCACACATTCCGCTTCTACTCTCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGACCTCTTAATGAAGGAATCATTTACATTATCAGAACAAGTGGCTGATGAAACTACCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGTCTAAAATGTATCTGGATGTAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACGAGGAGAGGCGCCCAGAGAATGAAAGATGACTTGCCAAAATTACAAAAGCCTGATGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2160 41.99 MLGFVVEKMFYSDHKKHKKSAIGSSNEAVQLEKSPSKYYIPSSTSTFLIPDNGLGGGKSKLTETIKTEKSKVFPEDHEPWSKRILDPGSKIVLKWNRMFICSCLLALFVDPLYLYLPALNGNGVSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRLITASSLQFVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECNLTFFDCDTFNSNARKTWANSTLVFGKCGTDGGDFKYGIFENAMSKNVVSSNFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEQVADETTQGEEQFSVVSNPSQSKMYLDVTLLASRFAANTRRGAQRMKDDLPKLQKPDEPDFSIEPDR 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14966992 14973382 - MELO3C010165.2.1 Cme02g01001 320890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01001 719 SUPERFAMILY Voltage-gated potassium channels 87 405 - -
Cme02g01001 719 SMART cnmp_10 483 614 IPR000595 -
Cme02g01001 719 Gene3D Jelly Rolls 481 601 IPR014710 -
Cme02g01001 719 SUPERFAMILY cAMP-binding domain-like 413 605 IPR018490 -
Cme02g01001 719 Pfam Ion transport protein 95 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme02g01001 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 56 716 - -
Cme02g01001 719 CDD CAP_ED 483 614 IPR000595 -
Cme02g01001 719 ProSiteProfiles cAMP/cGMP binding motif profile. 483 567 IPR000595 -
Cme02g01001 719 Gene3D - 121 408 - -
Cme02g01001 719 MobiDBLite consensus disorder prediction 693 719 - -
Cme02g01001 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 716 - -
Cme02g01001 719 Gene3D Helix hairpin bin 411 474 - -
Cme02g01001 719 Pfam Cyclic nucleotide-binding domain 506 594 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01001 Cme-Chr2:14966992 Cme04g00327 Cme-Chr4:2616233 0 dispersed
Cme02g01001 Cme-Chr2:14966992 Cme04g01904 Cme-Chr4:26747348 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01001 K05391 - csv:101218643 1412.51