Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01026 ATGCTTCTTCCTAAACTCTTCTGTTTCATCATTCTCTCTTCTGCCTTCCATTGCCTTTCTTATGAACCTCGCAACCCTGAAGTTGAAGCTCTGATTAATGTGAAGATGGCATTGAATGATCCGCACGGTGTGCTCAGCAATTGGGATCAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCCCCTGAGAATCTTGTTATAGGATTAGGAGCTCCGAGTCAGTCACTTTCCGGAAGCTTGGCTGGGGCGATTGGGAACCTTACAAATCTTCGCCAAGTGCTGCTGCAGAATAACAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCAAACAACCGGTTCTCTGGTCCAATACCAACATCTTTTGCTCAGCTAAATGGTCTACGCTATCTGAGGCTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTCGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTTCAGCCAGAACATTCAATGTGGTGGGGAATCCTATGATATGTGGAAGTAGTCCCAATGAAGGTTGCTCTGGCTCAGCCAATGCCGTTCCTCTTTCTTTCTCTCTAGAATCATCCACTGGAAGGCTTAGATCCAAAAGAATAGCAGTGGCTCTTGGGGTCAGCCTCAGTTGTGCTTTTCTGATTCTCTTAGCACTCGGAATTCTTTGGCGCAAAAGAAATCAGAAGACCAAAACCATCTTAGACATCAATGTACACAATCATGAAGTTGGGCTTGTGCGCTTAGGCAACTTGAGAAACTTTACTTTCAAAGAGCTCCAATTAGCAACAGACCATTTTAGTTCCAAGAATATACTTGGGGCTGGAGGGTTTGGTAATGTGTACAAAGGAAAGCTAGGAGACGGGACTATGGTGGCAGTCAAACGGCTAAAAGATGTAACAGGTACTACTGGAGAGTCCCAGTTTCGCACAGAGTTGGAGATGATTAGCCTTGCTGTTCATCGTAATTTGCTTCGATTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTATCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGTAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGCCTGCTGTACCTCCACGAGCAATGTGATCCTAAGATAATCCATAGAGATGTTAAAGCAGCTAATGTGCTTCTAGACGACTACTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGATTCTCATGTGACCACTGCTGTTCGTGGCACCGTTGGGCACATTGCTCCTGAGTATCTTTCAACTGGTCAATCTTCCGAGAAAACCGATGTGTTTGGGTTTGGCATTCTGTTGATAGAGCTGATTACTGGTATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTAAAAAAGATACAACAGGAAAAGAAGGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGCTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCCGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGTGATGGCCTTGTTGAGAAATGGGCTGCTGCCCACACTCATAATGATTTACATGTCAACCTTTTTCATTCACGAAACAGCTGCAAAAGTACATACAACCCCACAAATGTATTGAAGAATAATGGTAATGAACGGGAACATTCAAGCATGTTAAGTTTAACGATGGATGACGACGACGACGAGCGATCTCTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1920 45.16 MLLPKLFCFIILSSAFHCLSYEPRNPEVEALINVKMALNDPHGVLSNWDQDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLAGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPTSFAQLNGLRYLRLNNNSLSGPFPSSLAKIPQLAFLDLSFNNLSGPVPVFSARTFNVVGNPMICGSSPNEGCSGSANAVPLSFSLESSTGRLRSKRIAVALGVSLSCAFLILLALGILWRKRNQKTKTILDINVHNHEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAAAHTHNDLHVNLFHSRNSCKSTYNPTNVLKNNGNEREHSSMLSLTMDDDDDERSLDSYAMELSGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15194689 15199231 - MELO3C010190.2.1 Cme02g01026 320915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01026 639 Coils Coil 638 639 - -
Cme02g01026 639 SUPERFAMILY Protein kinase-like (PK-like) 273 564 IPR011009 -
Cme02g01026 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cme02g01026 639 SMART serkin_6 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01026 639 MobiDBLite consensus disorder prediction 617 639 - -
Cme02g01026 639 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 639 - -
Cme02g01026 639 Gene3D Transferase(Phosphotransferase) domain 1 371 582 - -
Cme02g01026 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Cme02g01026 639 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Cme02g01026 639 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Cme02g01026 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Cme02g01026 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Cme02g01026 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 639 - -
Cme02g01026 639 ProSiteProfiles Protein kinase domain profile. 294 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01026 639 SUPERFAMILY L domain-like 25 189 - -
Cme02g01026 639 Pfam Protein tyrosine and serine/threonine kinase 297 563 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01026 Cme-Chr2:15194689 Cme10g00319 Cme-Chr10:2096713 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64681 PF07714 PK_Tyr_Ser-Thr 2.20E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01026 - - csv:101218629 1227.23