Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01029 ATGGCGAAATCCACAGCGCAACAGGTTCAGATTAGGGAATCGAATGGGAATAATGTTGTAATGAAGACTAAAACGAAGAGGACTCGGAGGAGTGTTCCAAGAGATTCTCCCCCTCAACGGAGCTCGATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGGAGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTAAACTTAGTGCATACGACGACGAGGAAGCAGCAGCCCACGCTTACGACCTCGCAGCTCTAAAATATTGGGGCCAAGAAACCATTCTTAATTTTCCGCTAACCACGTACCAAAAAGAGCTGAAGGACATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCCTTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCTAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCTACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGTAACGACGTCGTTTACGACAACAACCGCATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAGCAAGAACTCGACCTAGCCCTCTTCCCATCGGACCAAAACCAAAGCAGCACCGATTCAGCGACGCCCGAACCAATCGCCTTACCCCCTTCGCACCGATCGACCACCTCCACCACCAACACCACCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAACTCCGCGGCGGAGTGTCCTTCGACGCCGTCGTCATCGGAGCAGCTCGAACAGCGGCGATGTTTATTTCCGGACGATGTCCAGACTTTCTTTGCGTGTGAGACCTCGGGATCTTACTGCTATGGAGAAGCGGATGATGCAATGTTTAGCGACTTCAATTCTTTCGTTCCGCCGCCGCTATCGCATTACGATTTCGTCGATTAG 1098 50.09 MAKSTAQQVQIRESNGNNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGKLSAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKDMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNRILTVDSILPSPKQELDLALFPSDQNQSSTDSATPEPIALPPSHRSTTSTTNTTTTTTSALGLLLQSSKFKEMMEMNSAAECPSTPSSSEQLEQRRCLFPDDVQTFFACETSGSYCYGEADDAMFSDFNSFVPPPLSHYDFVD 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15244527 15248422 - MELO3C010195.2.1 Cme02g01029 320918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01029 365 ProSiteProfiles AP2/ERF domain profile. 43 109 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 344 - -
Cme02g01029 365 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Cme02g01029 365 Gene3D AP2/ERF domain 43 111 IPR036955 GO:0003700|GO:0006355
Cme02g01029 365 MobiDBLite consensus disorder prediction 1 43 - -
Cme02g01029 365 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 Pfam AP2 domain 43 101 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Cme02g01029 365 SUPERFAMILY DNA-binding domain 42 110 IPR016177 GO:0003677
Cme02g01029 365 MobiDBLite consensus disorder prediction 245 280 - -
Cme02g01029 365 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 SMART rav1_2 43 115 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Cme02g01029 365 MobiDBLite consensus disorder prediction 1 22 - -
Cme02g01029 365 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02536 Cme-Chr1:33317965 Cme02g01029 Cme-Chr2:15244527 1.64E-134 dispersed
Cme02g01029 Cme-Chr2:15244527 Cme05g01005 Cme-Chr5:14308733 2.60E-85 dispersed
Cme04g02058 Cme-Chr4:27963717 Cme02g01029 Cme-Chr2:15244527 6.76E-51 dispersed
Cme02g01029 Cme-Chr2:15244527 Cme08g00672 Cme-Chr8:4410391 1.14E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40887 PF00847 AP2 7.10E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01029 K09285 - csv:101219103 677.937