Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01059 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGAAAACATGGACATGCAAAGTGCCACTTTGTGGCGATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCCGAAGGCAAAGATCTCGTGCTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAA 483 45.96 MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15557147 15560376 + MELO3C010222.2.1 Cme02g01059 320948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01059 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cme02g01059 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme02g01059 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cme02g01059 160 CDD S1_eIF5A 86 156 - -
Cme02g01059 160 Gene3D - 86 159 IPR012340 -
Cme02g01059 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme02g01059 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cme02g01059 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme02g01059 160 Gene3D - 1 85 IPR014722 -
Cme02g01059 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cme02g01059 160 MobiDBLite consensus disorder prediction 1 21 - -
Cme02g01059 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cme02g01059 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01059 Cme-Chr2:15557147 Cme03g01578 Cme-Chr3:24781554 1.35E-89 dispersed
Cme02g01059 Cme-Chr2:15557147 Cme07g00120 Cme-Chr7:806737 4.16E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01059 K03263 - csv:101210204 325.865