Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01060 ATGACGGAGCCGGAAAGCTTTGGAACTGACCAACTCGGAAGCTCCAAGGCGGCTATTGAAGGGCAGGAAGATGATGAAGAAGAAATGGAAGATTCGGATGATGAACCGGAGTTGGAAGGAGAAGGAGGAGGAAGAGTGAGTGAGTTGAAGCCGACTGAGTTGAGAACTGGTCCGTCGGTTTGTGAAGCTGTGGTGATGGGTTCACTTTCTGAAACCCTAACGGTGGCTTTTGTGAATCAGTCCTCTGAAAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTTCTGCTCAGTCTGTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCACAGTGAGCCTTTGGCGGTTGAATCAACCCAGACAGATAAGGTGCAAGAACAAAACCATCTTCAGTTGACAGTATTTAAAGGGCCTGATTCGGAACAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCTGCAAGTCCAAATTTATCTGAACATAAGCTGTCACCTAAGGTCCAGAAAGTATGTAAGCCAGAGCCAAACCAGAAAAATTTCTTCAACCATAAAACTCCATCATCTGTTCCCAATGCAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATTGAATGTTGTGATGACTCAGGGCAAACAACAGAGATTGTTTACAAAAGTCAACATAGCCATGATCCACCTAGGAAGATTAGTATACCGAAGGAAAGTAAGCTTGTGCCCTATGTTGAGCCTGTGGTTAAAAAAATCATTGCTGAGCATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGTCTTCAAAAGAACCGTTACGAGAAACAGCTATAGTTGTCTTTGAAAGGAAACGACAGTACTCTAACGACTCTAACGGAAATGATGAATTTAAAATCAAAGATGAGAATGACTATGAAACTGAGGCAAAACTAAAAGTTAAGAAAGGCAGTGCGGGAAACTCAGGCACTTCCTTAAAACCTGGAAAGAAACCCAAGTTTGTGGTGCATGCTGCAGGTGACGTTGGAATCTCTGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTATTACCGATGTACTTCTGCTGGTTGTCCAGTCCGTAAGCACATCGAATCAGCAGTGGAAAATCCTAATGCAGTAATAATAACATACAAGGGAGTTCACGATCACGACACGCCTGTACCAAAGAAACGACACGGTCCACCAAGTGCTCTTCTTGTAGCTGCTGCAGCACCAGCCTCCATGAGCAGCAATACACAACCGAAGAAAACTGATGTGGTCGAGTCCCAAATATCTTCAACACAATGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCATGCTGA 1539 44.44 MTEPESFGTDQLGSSKAAIEGQEDDEEEMEDSDDEPELEGEGGGRVSELKPTELRTGPSVCEAVVMGSLSETLTVAFVNQSSENGRSDGLPVNSSAQSVEGAELKQAPSSHSEPLAVESTQTDKVQEQNHLQLTVFKGPDSEQSPTSVTQSISSSASPNLSEHKLSPKVQKVCKPEPNQKNFFNHKTPSSVPNARTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDDSGQTTEIVYKSQHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTSSKEPLRETAIVVFERKRQYSNDSNGNDEFKIKDENDYETEAKLKVKKGSAGNSGTSLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDTPVPKKRHGPPSALLVAAAAPASMSSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15561903 15565663 + MELO3C010223.2.1 Cme02g01060 320949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01060 512 Pfam WRKY DNA -binding domain 374 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 Pfam WRKY DNA -binding domain 200 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 SUPERFAMILY WRKY DNA-binding domain 368 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 510 IPR044810 GO:0003700
Cme02g01060 512 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 25 510 - -
Cme02g01060 512 MobiDBLite consensus disorder prediction 1 16 - -
Cme02g01060 512 Gene3D WRKY domain 357 433 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 Gene3D WRKY domain 186 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 SMART WRKY_cls 372 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 MobiDBLite consensus disorder prediction 21 38 - -
Cme02g01060 512 MobiDBLite consensus disorder prediction 180 197 - -
Cme02g01060 512 MobiDBLite consensus disorder prediction 1 58 - -
Cme02g01060 512 ProSiteProfiles WRKY domain profile. 367 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 MobiDBLite consensus disorder prediction 80 216 - -
Cme02g01060 512 MobiDBLite consensus disorder prediction 112 164 - -
Cme02g01060 512 MobiDBLite consensus disorder prediction 80 105 - -
Cme02g01060 512 ProSiteProfiles WRKY domain profile. 193 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01060 512 SUPERFAMILY WRKY DNA-binding domain 196 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01060 Cme-Chr2:15561903 Cme04g02759 Cme-Chr4:32820268 3.03E-47 dispersed
Cme02g01060 Cme-Chr2:15561903 Cme09g00236 Cme-Chr9:1797171 6.48E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40888 PF03106 WRKY 6.60E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01060 - - csv:101209954 832.787