Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01060 | ATGACGGAGCCGGAAAGCTTTGGAACTGACCAACTCGGAAGCTCCAAGGCGGCTATTGAAGGGCAGGAAGATGATGAAGAAGAAATGGAAGATTCGGATGATGAACCGGAGTTGGAAGGAGAAGGAGGAGGAAGAGTGAGTGAGTTGAAGCCGACTGAGTTGAGAACTGGTCCGTCGGTTTGTGAAGCTGTGGTGATGGGTTCACTTTCTGAAACCCTAACGGTGGCTTTTGTGAATCAGTCCTCTGAAAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTTCTGCTCAGTCTGTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCACAGTGAGCCTTTGGCGGTTGAATCAACCCAGACAGATAAGGTGCAAGAACAAAACCATCTTCAGTTGACAGTATTTAAAGGGCCTGATTCGGAACAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCTGCAAGTCCAAATTTATCTGAACATAAGCTGTCACCTAAGGTCCAGAAAGTATGTAAGCCAGAGCCAAACCAGAAAAATTTCTTCAACCATAAAACTCCATCATCTGTTCCCAATGCAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATTGAATGTTGTGATGACTCAGGGCAAACAACAGAGATTGTTTACAAAAGTCAACATAGCCATGATCCACCTAGGAAGATTAGTATACCGAAGGAAAGTAAGCTTGTGCCCTATGTTGAGCCTGTGGTTAAAAAAATCATTGCTGAGCATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGTCTTCAAAAGAACCGTTACGAGAAACAGCTATAGTTGTCTTTGAAAGGAAACGACAGTACTCTAACGACTCTAACGGAAATGATGAATTTAAAATCAAAGATGAGAATGACTATGAAACTGAGGCAAAACTAAAAGTTAAGAAAGGCAGTGCGGGAAACTCAGGCACTTCCTTAAAACCTGGAAAGAAACCCAAGTTTGTGGTGCATGCTGCAGGTGACGTTGGAATCTCTGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTATTACCGATGTACTTCTGCTGGTTGTCCAGTCCGTAAGCACATCGAATCAGCAGTGGAAAATCCTAATGCAGTAATAATAACATACAAGGGAGTTCACGATCACGACACGCCTGTACCAAAGAAACGACACGGTCCACCAAGTGCTCTTCTTGTAGCTGCTGCAGCACCAGCCTCCATGAGCAGCAATACACAACCGAAGAAAACTGATGTGGTCGAGTCCCAAATATCTTCAACACAATGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCATGCTGA | 1539 | 44.44 | MTEPESFGTDQLGSSKAAIEGQEDDEEEMEDSDDEPELEGEGGGRVSELKPTELRTGPSVCEAVVMGSLSETLTVAFVNQSSENGRSDGLPVNSSAQSVEGAELKQAPSSHSEPLAVESTQTDKVQEQNHLQLTVFKGPDSEQSPTSVTQSISSSASPNLSEHKLSPKVQKVCKPEPNQKNFFNHKTPSSVPNARTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDDSGQTTEIVYKSQHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTSSKEPLRETAIVVFERKRQYSNDSNGNDEFKIKDENDYETEAKLKVKKGSAGNSGTSLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDTPVPKKRHGPPSALLVAAAAPASMSSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 15561903 | 15565663 | + | MELO3C010223.2.1 | Cme02g01060 | 320949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01060 | 512 | Pfam | WRKY DNA -binding domain | 374 | 429 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | Pfam | WRKY DNA -binding domain | 200 | 254 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | SUPERFAMILY | WRKY DNA-binding domain | 368 | 432 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 25 | 510 | IPR044810 | GO:0003700 | |
Cme02g01060 | 512 | PANTHER | WRKY TRANSCRIPTION FACTOR 32-RELATED | 25 | 510 | - | - | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cme02g01060 | 512 | Gene3D | WRKY domain | 357 | 433 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | Gene3D | WRKY domain | 186 | 258 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | SMART | WRKY_cls | 372 | 431 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | SMART | WRKY_cls | 198 | 256 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 21 | 38 | - | - | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 180 | 197 | - | - | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cme02g01060 | 512 | ProSiteProfiles | WRKY domain profile. | 367 | 432 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 80 | 216 | - | - | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 112 | 164 | - | - | |
Cme02g01060 | 512 | MobiDBLite | consensus disorder prediction | 80 | 105 | - | - | |
Cme02g01060 | 512 | ProSiteProfiles | WRKY domain profile. | 193 | 257 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme02g01060 | 512 | SUPERFAMILY | WRKY DNA-binding domain | 196 | 257 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01060 | Cme-Chr2:15561903 | Cme04g02759 | Cme-Chr4:32820268 | 3.03E-47 | dispersed | |
Cme02g01060 | Cme-Chr2:15561903 | Cme09g00236 | Cme-Chr9:1797171 | 6.48E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40888 | PF03106 | WRKY | 6.60E-24 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01060 | - | - | csv:101209954 | 832.787 |