Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01069 ATGCAGAGTCAGATGAGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCACTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTTTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGAAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATTTTTTGTCTCCTATGAATCCGGTTCCATCTCAATTAAGGTATCTGCAATACGTTGCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTATGGACAGAGCTCTCACGTTGGATTGTATCATTTTGAGGTTTATTCCAAATTTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGGCAGAGTCTGAACTGGTTAAGATTGATGTTAATTGTCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGACACATTGTGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAAGTTGTACTGTTGCAAATGATGTACTTTGCATTGAGGAAGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAGTAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGTGTGCAAGTCCCAGAAAATTTCCACAGAAGTTCACATTGGAGAACAAAAGTAAAATCCTAGAGAAGGAAGGATCTAGTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACAGAACAAAACAATGAATCTAATTCAGTATTCCAACGGATGTCTCAATCTCCAGACTCTTTTCCTCTCAACTACGACATGTTGCAAGATTCCCCAAACTCAGAGAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCAGAAAACTGCATCTTCATCTTTTCGAGATGCAGCATTGGATGTTTCTCTTGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAAACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCCCTGCCTCCTCCTCACTCTACTTCAACTGAATCGCTACTTCAGTCTAGTAACTTTTCAACTCTACGACCAAATAGAGCTTCACTCACTAAGGAAACAGAAATCTATTCGAAGGATCAAAATCAGTTATCAGCCATCATCCCTCCCCTGTCTATAACCTCTACAATTAGTTCCTCAATGCAGTCTTCTCCACCACCTCCTCCACCACCTCCTTCAACACCTCCTTTGAAGGATACCGTAGCTGTTAGAGTTAAAGCTTCTTCGACAACACCCTCTCCTTTTCCTTCTACATTAGCTTCCCATCCTACAATTGGATCCTCCGTTCCTCAACCACCACCACCTCCTCCTCCTCCCACATCCACTGTAACTCATAAAATTTCATCTCCAATCCCTTCACCTCCAACACCACCGCCTCCTCCTTCTCTTCCTCCTCCTCCTACAATAACCATTACCAATCCTAAAATCTCCTCTTCAGTGCCTCCACCACCACCTCCTCTTCCTATGACTTCCAAACAGGTTGAAACTACTACAACATCCCCATTTATTCCTCCTCCACCACCACCACCTATTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCGCCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCGCCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCTCATGTTCCCCCTCCTCCACCACCGCCTGCTTCCACCAAAGGCTCCCCTTCATCTGTTCCTTCTGCTCCCCCTCCTCCTACCATTTCTGGGAGAGGGCCTTCAAAATCAGGTATAAAGGGACGGAGTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACCAAAAGTCGAGTGGACGCGGTTCAGTTGGCAATAAGCCCGAGAAAGTACAACTGATTGATCACAGACGAGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTCTGGATATCGATCAGGTCGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGACAAGCTTGGAAAATGTGAACAGTTTTTCTTAGAGTTGATGCAAGTACCTCGAGCTGAATCTAAGCTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGGTTGCGGACCTCAAAAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTTGGAAATGCCTTAAACCAGGGCACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGTCTCCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAACTTGGAGCCTGCATCGAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCAGAATGGTTCTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGCGAACTTTAGCTTCTCTGTACTCTACTGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGTGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAGGTGAAAAATCAAAGACAGGACACTTGCACAAGAGGACGAAGACCAAACAGTTATCGCACTCCCAGATCGAGATTGGCAATGTCAAGTAA 3630 42.75 MQSQMSDILSKYDMTIMDYPQHYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQAESELVKIDVNCHIQGDVVLECITLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGSCTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKPDSNSLWSTQVSSLLQCASPRKFPQKFTLENKSKILEKEGSSPTSKFSPDAAKTEQNNESNSVFQRMSQSPDSFPLNYDMLQDSPNSERSDRTSYSASVGSHSFIDSEGEIDVSHQKTASSSFRDAALDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPPPHSTSTESLLQSSNFSTLRPNRASLTKETEIYSKDQNQLSAIIPPLSITSTISSSMQSSPPPPPPPPSTPPLKDTVAVRVKASSTTPSPFPSTLASHPTIGSSVPQPPPPPPPPTSTVTHKISSPIPSPPTPPPPPSLPPPPTITITNPKISSSVPPPPPPLPMTSKQVETTTTSPFIPPPPPPPIPMTSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSHVPPPPPPPASTKGSPSSVPSAPPPPTISGRGPSKSGIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKDKLGKCEQFFLELMQVPRAESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLANLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSTVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATEGEKSKTGHLHKRTKTKQLSHSQIEIGNVK 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15699961 15709631 + MELO3C010231.2.1 Cme02g01069 320958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01069 1209 MobiDBLite consensus disorder prediction 369 424 - -
Cme02g01069 1209 Pfam Formin Homology 2 Domain 794 1161 IPR015425 -
Cme02g01069 1209 Gene3D Protein tyrosine phosphatase superfamily 2 122 IPR029021 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 673 687 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 600 616 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 549 792 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 363 424 - -
Cme02g01069 1209 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 7 117 IPR029021 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 555 570 - -
Cme02g01069 1209 Pfam C2 domain of PTEN tumour-suppressor protein 130 268 IPR014020 -
Cme02g01069 1209 ProSiteProfiles Formin homology-2 (FH2) domain profile. 787 1186 IPR015425 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 1179 1209 - -
Cme02g01069 1209 SUPERFAMILY Formin homology 2 domain (FH2 domain) 744 1177 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 493 513 - -
Cme02g01069 1209 SMART it6_source 473 1207 IPR015425 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 577 599 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 623 663 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 842 862 - -
Cme02g01069 1209 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 132 269 IPR035892 -
Cme02g01069 1209 Coils Coil 1161 1181 - -
Cme02g01069 1209 PANTHER FORMIN-J 2 1188 - -
Cme02g01069 1209 ProSiteProfiles C2 tensin-type domain profile. 130 269 IPR014020 -
Cme02g01069 1209 SMART PTEN_C2_2 128 268 IPR014020 -
Cme02g01069 1209 Gene3D - 127 271 - -
Cme02g01069 1209 Gene3D Formin, FH2 domain 786 1171 IPR042201 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 740 770 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01069 Cme-Chr2:15699961 Cme12g01971 Cme-Chr12:25543931 4.15E-112 dispersed
Cme03g01290 Cme-Chr3:22471660 Cme02g01069 Cme-Chr2:15699961 1.15E-27 transposed
Cme04g01449 Cme-Chr4:20598444 Cme02g01069 Cme-Chr2:15699961 2.65E-177 transposed
Cme11g00355 Cme-Chr11:3644288 Cme02g01069 Cme-Chr2:15699961 3.18E-33 transposed
Cme02g01069 Cme-Chr2:15699961 Cme07g00118 Cme-Chr7:785333 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01069 - - csv:101221713 2038.85