Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01069 ATGCAGAGTCAGATGAGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCACTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTTTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGAAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATTTTTTGTCTCCTATGAATCCGGTTCCATCTCAATTAAGGTATCTGCAATACGTTGCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTATGGACAGAGCTCTCACGTTGGATTGTATCATTTTGAGGTTTATTCCAAATTTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGGCAGAGTCTGAACTGGTTAAGATTGATGTTAATTGTCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGACACATTGTGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAAGTTGTACTGTTGCAAATGATGTACTTTGCATTGAGGAAGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAGTAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGTGTGCAAGTCCCAGAAAATTTCCACAGAAGTTCACATTGGAGAACAAAAGTAAAATCCTAGAGAAGGAAGGATCTAGTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACAGAACAAAACAATGAATCTAATTCAGTATTCCAACGGATGTCTCAATCTCCAGACTCTTTTCCTCTCAACTACGACATGTTGCAAGATTCCCCAAACTCAGAGAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCAGAAAACTGCATCTTCATCTTTTCGAGATGCAGCATTGGATGTTTCTCTTGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAAACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCCCTGCCTCCTCCTCACTCTACTTCAACTGAATCGCTACTTCAGTCTAGTAACTTTTCAACTCTACGACCAAATAGAGCTTCACTCACTAAGGAAACAGAAATCTATTCGAAGGATCAAAATCAGTTATCAGCCATCATCCCTCCCCTGTCTATAACCTCTACAATTAGTTCCTCAATGCAGTCTTCTCCACCACCTCCTCCACCACCTCCTTCAACACCTCCTTTGAAGGATACCGTAGCTGTTAGAGTTAAAGCTTCTTCGACAACACCCTCTCCTTTTCCTTCTACATTAGCTTCCCATCCTACAATTGGATCCTCCGTTCCTCAACCACCACCACCTCCTCCTCCTCCCACATCCACTGTAACTCATAAAATTTCATCTCCAATCCCTTCACCTCCAACACCACCGCCTCCTCCTTCTCTTCCTCCTCCTCCTACAATAACCATTACCAATCCTAAAATCTCCTCTTCAGTGCCTCCACCACCACCTCCTCTTCCTATGACTTCCAAACAGGTTGAAACTACTACAACATCCCCATTTATTCCTCCTCCACCACCACCACCTATTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCGCCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCGCCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCTCATGTTCCCCCTCCTCCACCACCGCCTGCTTCCACCAAAGGCTCCCCTTCATCTGTTCCTTCTGCTCCCCCTCCTCCTACCATTTCTGGGAGAGGGCCTTCAAAATCAGGTATAAAGGGACGGAGTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACCAAAAGTCGAGTGGACGCGGTTCAGTTGGCAATAAGCCCGAGAAAGTACAACTGATTGATCACAGACGAGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTCTGGATATCGATCAGGTCGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGACAAGCTTGGAAAATGTGAACAGTTTTTCTTAGAGTTGATGCAAGTACCTCGAGCTGAATCTAAGCTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGGTTGCGGACCTCAAAAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTTGGAAATGCCTTAAACCAGGGCACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGTCTCCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAACTTGGAGCCTGCATCGAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCAGAATGGTTCTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGCGAACTTTAGCTTCTCTGTACTCTACTGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGTGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAGGTGAAAAATCAAAGACAGGACACTTGCACAAGAGGACGAAGACCAAACAGTTATCGCACTCCCAGATCGAGATTGGCAATGTCAAGTAA 3630 42.75 MQSQMSDILSKYDMTIMDYPQHYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQAESELVKIDVNCHIQGDVVLECITLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGSCTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKPDSNSLWSTQVSSLLQCASPRKFPQKFTLENKSKILEKEGSSPTSKFSPDAAKTEQNNESNSVFQRMSQSPDSFPLNYDMLQDSPNSERSDRTSYSASVGSHSFIDSEGEIDVSHQKTASSSFRDAALDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPPPHSTSTESLLQSSNFSTLRPNRASLTKETEIYSKDQNQLSAIIPPLSITSTISSSMQSSPPPPPPPPSTPPLKDTVAVRVKASSTTPSPFPSTLASHPTIGSSVPQPPPPPPPPTSTVTHKISSPIPSPPTPPPPPSLPPPPTITITNPKISSSVPPPPPPLPMTSKQVETTTTSPFIPPPPPPPIPMTSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSHVPPPPPPPASTKGSPSSVPSAPPPPTISGRGPSKSGIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKDKLGKCEQFFLELMQVPRAESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLANLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSTVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATEGEKSKTGHLHKRTKTKQLSHSQIEIGNVK 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15699961 15709631 + MELO3C010231.2.1 Cme02g01069 320958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01069 1209 MobiDBLite consensus disorder prediction 369 424 - -
Cme02g01069 1209 Pfam Formin Homology 2 Domain 794 1161 IPR015425 -
Cme02g01069 1209 Gene3D Protein tyrosine phosphatase superfamily 2 122 IPR029021 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 673 687 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 600 616 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 549 792 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 363 424 - -
Cme02g01069 1209 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 7 117 IPR029021 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 555 570 - -
Cme02g01069 1209 Pfam C2 domain of PTEN tumour-suppressor protein 130 268 IPR014020 -
Cme02g01069 1209 ProSiteProfiles Formin homology-2 (FH2) domain profile. 787 1186 IPR015425 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 1179 1209 - -
Cme02g01069 1209 SUPERFAMILY Formin homology 2 domain (FH2 domain) 744 1177 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 493 513 - -
Cme02g01069 1209 SMART it6_source 473 1207 IPR015425 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 577 599 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 623 663 - -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 842 862 - -
Cme02g01069 1209 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 132 269 IPR035892 -
Cme02g01069 1209 Coils Coil 1161 1181 - -
Cme02g01069 1209 PANTHER FORMIN-J 2 1188 - -
Cme02g01069 1209 ProSiteProfiles C2 tensin-type domain profile. 130 269 IPR014020 -
Cme02g01069 1209 SMART PTEN_C2_2 128 268 IPR014020 -
Cme02g01069 1209 Gene3D - 127 271 - -
Cme02g01069 1209 Gene3D Formin, FH2 domain 786 1171 IPR042201 -
Cme02g01069 1209 MobiDBLite consensus disorder prediction 740 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01069 - - - csv:101221713 2038.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01069 Cme-Chr2:15699961 Cme12g01971 Cme-Chr12:25543931 4.15E-112 dispersed
Cme03g01290 Cme-Chr3:22471660 Cme02g01069 Cme-Chr2:15699961 1.15E-27 transposed
Cme04g01449 Cme-Chr4:20598444 Cme02g01069 Cme-Chr2:15699961 2.65E-177 transposed
Cme11g00355 Cme-Chr11:3644288 Cme02g01069 Cme-Chr2:15699961 3.18E-33 transposed
Cme02g01069 Cme-Chr2:15699961 Cme07g00118 Cme-Chr7:785333 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01069 Cme_Chr02 FPKM 0.278431 0.0 0.179377 0.171059 0.920633 1.269861 1.079614 0.0 0.0 0.0