Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01072 ATGGCGGAAAAGGATAGAGATGGTAGTTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTCGCGAAGGTGTACCATGCCCGGAACTTGCAGACTGGGACGAGTATGGCGATGAAGGTCGTTGGGAAAGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAACATCCGAATATCGTTGAGCTTCATGAAGTTATGGCGAGCAAATCGAAGATTTATTTTGCTATGGAGCTTGTTCGAGGTGGAGAATTGTTCTCAAAAATTTCCAAAGGTCGATTGAGAGAAGATGTCGCTAGGGTTTACTTTCAGCAGCTAATTTCCGCGATCGATTTCTGTCACAGTCGTGGAGTTTATCATCGGGATCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAACCTTAAGGTAACTGATTTTGGACTAAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGAACACCAGCGTATGTTGCCCCGGAAGTTATCGGGAAGAAAGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTTGCCGGATTTCTTCCATTTCAAGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGTCCGCCGTGGTTCTCACCGGAAGCCCGTCGACTAGTCACCAAACTCCTCGATCCAAATCCGAACACCAGAATCCCGACTTCGAAGATAATGGAATCGTCCTGGTTCAGGAAATCTATACCAAAATCTGTGGTGACGAAAGAGGAACAGGAATTCAACGAGAGCAACGAGAAACTAAAGCAATCCGAAACTCTAAATGCCTTCCATATAATTTCTTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAAAAAAGGGAAGAAAAAGAGGAGCTGAGATTTGCAACGACGAGGCCGGCGAGCAGTGTGATATCGAAGCTGGAGGAGGTGGCTAAGGCAGGGAAATTCAGCGTCAAAAAGAGTGAATCAAGGGTCAGATTGCAGGGCCAGGAGTGTGGAAGAAAAGGGAAACTCTCAGTGGCTGCGGAAATCTTCGCGGTGACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGACACACTTGAATACAATCAATTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGATATAGTGTGGACATCACCAACGGAAAATTCCATGCCGGCTTGA 1293 47.25 MAEKDRDGSSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLVTKLLDPNPNTRIPTSKIMESSWFRKSIPKSVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLSVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15744556 15746494 + MELO3C010234.2.1 Cme02g01072 320961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01072 430 Gene3D Transferase(Phosphotransferase) domain 1 99 298 - -
Cme02g01072 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cme02g01072 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cme02g01072 430 CDD STKc_SnRK3 16 270 - -
Cme02g01072 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01072 430 SUPERFAMILY Protein kinase-like (PK-like) 13 286 IPR011009 -
Cme02g01072 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Cme02g01072 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01072 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cme02g01072 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cme02g01072 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01072 430 CDD CIPK_C 301 416 - -
Cme02g01072 430 PANTHER - 8 428 - -
Cme02g01072 430 Gene3D Kinase associated domain 1, KA1 299 421 - -
Cme02g01072 430 Coils Coil 280 300 - -
Cme02g01072 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01072 Cme-Chr2:15744556 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme05g01830 Cme-Chr5:27161860 Cme02g01072 Cme-Chr2:15744556 0 transposed
Cme02g01072 Cme-Chr2:15744556 Cme07g00116 Cme-Chr7:765253 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64685 PF00069 Pkinase 5.00E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01072 - K07198 csv:101211847 843.958