Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01072 | ATGGCGGAAAAGGATAGAGATGGTAGTTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTCGCGAAGGTGTACCATGCCCGGAACTTGCAGACTGGGACGAGTATGGCGATGAAGGTCGTTGGGAAAGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAACATCCGAATATCGTTGAGCTTCATGAAGTTATGGCGAGCAAATCGAAGATTTATTTTGCTATGGAGCTTGTTCGAGGTGGAGAATTGTTCTCAAAAATTTCCAAAGGTCGATTGAGAGAAGATGTCGCTAGGGTTTACTTTCAGCAGCTAATTTCCGCGATCGATTTCTGTCACAGTCGTGGAGTTTATCATCGGGATCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAACCTTAAGGTAACTGATTTTGGACTAAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGAACACCAGCGTATGTTGCCCCGGAAGTTATCGGGAAGAAAGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTTGCCGGATTTCTTCCATTTCAAGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGTCCGCCGTGGTTCTCACCGGAAGCCCGTCGACTAGTCACCAAACTCCTCGATCCAAATCCGAACACCAGAATCCCGACTTCGAAGATAATGGAATCGTCCTGGTTCAGGAAATCTATACCAAAATCTGTGGTGACGAAAGAGGAACAGGAATTCAACGAGAGCAACGAGAAACTAAAGCAATCCGAAACTCTAAATGCCTTCCATATAATTTCTTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAAAAAAGGGAAGAAAAAGAGGAGCTGAGATTTGCAACGACGAGGCCGGCGAGCAGTGTGATATCGAAGCTGGAGGAGGTGGCTAAGGCAGGGAAATTCAGCGTCAAAAAGAGTGAATCAAGGGTCAGATTGCAGGGCCAGGAGTGTGGAAGAAAAGGGAAACTCTCAGTGGCTGCGGAAATCTTCGCGGTGACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGACACACTTGAATACAATCAATTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGATATAGTGTGGACATCACCAACGGAAAATTCCATGCCGGCTTGA | 1293 | 47.25 | MAEKDRDGSSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLVTKLLDPNPNTRIPTSKIMESSWFRKSIPKSVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLSVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 15744556 | 15746494 | + | MELO3C010234.2.1 | Cme02g01072 | 320961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01072 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 99 | 298 | - | - | |
Cme02g01072 | 430 | ProSitePatterns | Protein kinases ATP-binding region signature. | 23 | 50 | IPR017441 | GO:0005524 | |
Cme02g01072 | 430 | Pfam | NAF domain | 298 | 357 | IPR004041 | GO:0007165 | |
Cme02g01072 | 430 | CDD | STKc_SnRK3 | 16 | 270 | - | - | |
Cme02g01072 | 430 | Pfam | Protein kinase domain | 17 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g01072 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 286 | IPR011009 | - | |
Cme02g01072 | 430 | ProSiteProfiles | NAF domain profile. | 295 | 319 | IPR018451 | GO:0007165 | |
Cme02g01072 | 430 | ProSiteProfiles | Protein kinase domain profile. | 17 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g01072 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672|GO:0006468 | |
Cme02g01072 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 98 | - | - | |
Cme02g01072 | 430 | SMART | serkin_6 | 17 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g01072 | 430 | CDD | CIPK_C | 301 | 416 | - | - | |
Cme02g01072 | 430 | PANTHER | - | 8 | 428 | - | - | |
Cme02g01072 | 430 | Gene3D | Kinase associated domain 1, KA1 | 299 | 421 | - | - | |
Cme02g01072 | 430 | Coils | Coil | 280 | 300 | - | - | |
Cme02g01072 | 430 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 8 | 428 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01072 | Cme-Chr2:15744556 | Cme12g01283 | Cme-Chr12:20898876 | 0 | dispersed | |
Cme05g01830 | Cme-Chr5:27161860 | Cme02g01072 | Cme-Chr2:15744556 | 0 | transposed | |
Cme02g01072 | Cme-Chr2:15744556 | Cme07g00116 | Cme-Chr7:765253 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64685 | PF00069 | Pkinase | 5.00E-72 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01072 | - | K07198 | csv:101211847 | 843.958 |