Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01073 TTTCTTATTAGAGGAGTTTCTTTTAGTCCAGTACAAGTTAAAAACTCTAGGGAGCAGAAGGGAAGATGGTTGATTTTGATAGCATGGGATAGGGCCGAAACCGCCATGAAACAGGAGTTGTCAAGTATGATTTCAAAAGCCAGGACGAATGCAGTTGGAGACACTTTAGATTCAAGCTGCATCACCTGTCCACTCCCTACTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGCGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCTGAAAATGAGGCAGCTATGGCATATGATAGTGCTGCTATCAGAATCAGGAGTGGAGATTGCCATAGAAACTTTCCTTGGACAAAATTCACTATCGAAGAGCCTAACTTTCAGAAACTTTACACTACAGAAACTTTGCTTAATATGATAAAGGACGGTTCTTACAGAACTAAATTTTCTGAGTATTTAAGGGATTGTTCTGAAAGCACACAAACGTCGGTGAGTCCCTCCACAGAAAAGGCGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATACCAAAGAAGTACGCTGTTAAGTACTTTCCTCAAATATCAGCTAGTACAACAGAAAATGTAGAACCCGTTGATGATGATCGCGATGTGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGCTACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGTGGTTGGAATCGCTTTGTGAAGGAAAAACAGCTTAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCCTCAAGTGATTCTAAAACTACATTTTGTGTTGTAGATGTTAATAACCGTGACAACAGTGGTGGCCTGGTTGAGAATGAAACCACATGTAGCGAATTGCAGCTCAATTTGAGGCATGGAGAAGTTGAGGAATCGGTCTCGCCTAAGCACATAGACAATGAACTAAAAGATGAACGTGAAGTTAAG 1089 40.77 FLIRGVSFSPVQVKNSREQKGRWLILIAWDRAETAMKQELSSMISKARTNAVGDTLDSSCITCPLPTNGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTETLLNMIKDGSYRTKFSEYLRDCSESTQTSVSPSTEKAHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISASTTENVEPVDDDRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAASSDSKTTFCVVDVNNRDNSGGLVENETTCSELQLNLRHGEVEESVSPKHIDNELKDEREVK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15752452 15754763 - MELO3C029441.2.1 Cme02g01073 320962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01073 363 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Cme02g01073 363 CDD B3_DNA 201 312 IPR003340 GO:0003677
Cme02g01073 363 Gene3D - 197 322 IPR015300 -
Cme02g01073 363 SUPERFAMILY DNA-binding pseudobarrel domain 201 312 IPR015300 -
Cme02g01073 363 PANTHER DNA-BINDING PROTEIN RAV1 36 356 - -
Cme02g01073 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 356 IPR044800 GO:0003700
Cme02g01073 363 ProSiteProfiles B3 DNA-binding domain profile. 202 316 IPR003340 GO:0003677
Cme02g01073 363 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
Cme02g01073 363 SMART B3_2 202 316 IPR003340 GO:0003677
Cme02g01073 363 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Cme02g01073 363 Pfam B3 DNA binding domain 202 311 IPR003340 GO:0003677
Cme02g01073 363 ProSiteProfiles AP2/ERF domain profile. 80 135 IPR001471 GO:0003700|GO:0006355
Cme02g01073 363 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Cme02g01073 363 Pfam AP2 domain 79 126 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01073 K09287 RAV; RAV-like factor - csv:101212246 643.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00470 Cme-Chr2:4367391 Cme02g01073 Cme-Chr2:15752452 4.53E-104 dispersed
Cme02g01073 Cme-Chr2:15752452 Cme10g00289 Cme-Chr10:1878784 5.02E-56 dispersed
Cme02g01073 Cme-Chr2:15752452 Cme09g01901 Cme-Chr9:23146679 1.11E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02367 . 1 164 RAV Transcription Factor Family AT2G36080 61.2 3.8e-49 191.4
Cme11g02307 . 93 227 RAV Transcription Factor Family AT2G36080 61.6 2.0e-42 169.1
Cme09g01901 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.2e-40 160.6
Cme07g01632 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Cme10g00289 . 179 302 RAV Transcription Factor Family AT2G36080 60.8 5.2e-38 154.5
Cme09g01901 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 4.0e-57 218.8
Cme11g02307 . 86 326 RAV Transcription Factor Family AT2G46870 50.2 1.1e-54 210.7
Cme10g00289 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cme04g02367 . 36 156 RAV Transcription Factor Family AT2G46870 63.7 7.1e-38 154.8
Cme04g02367 . 41 167 RAV Transcription Factor Family AT3G11580 68.2 2.2e-44 176.0
Cme11g02307 . 81 212 RAV Transcription Factor Family AT3G11580 56.9 2.1e-39 159.5
Cme09g01901 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.8e-39 159.1
Cme07g01632 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 8.1e-39 157.5
Cme09g01901 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 3.4e-53 205.7
Cme11g02307 . 94 326 RAV Transcription Factor Family AT3G61970 52.3 1.8e-51 199.9
Cme10g00289 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Cme09g01901 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 3.0e-42 169.5
Cme07g01632 . 63 186 RAV Transcription Factor Family AT4G01500 58.3 2.0e-38 156.8
Cme04g02367 . 41 241 RAV Transcription Factor Family AT5G06250 56.7 3.9e-53 205.3
Cme07g01632 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.5e-41 165.2
Cme09g01901 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Cme11g02307 . 96 205 RAV Transcription Factor Family AT5G06250 65.0 1.9e-39 159.8
Cme10g00289 . 179 298 RAV Transcription Factor Family AT5G06250 57.9 5.2e-37 151.8
Cme02g01073 . 80 359 RAV Transcription Factor Family AT1G50680 54.2 6.6e-82 301.2
Cme02g00470 . 84 303 RAV Transcription Factor Family AT1G50680 62.7 2.0e-78 289.7
Cme02g01073 . 76 328 RAV Transcription Factor Family AT1G51120 56.7 5.9e-81 298.1
Cme02g00470 . 89 393 RAV Transcription Factor Family AT1G51120 52.2 1.2e-78 290.4
Cme10g00289 . 22 343 RAV Transcription Factor Family AT1G13260 66.8 3.0e-106 382.1
Cme09g00779 . 1 293 RAV Transcription Factor Family AT1G13260 61.8 1.5e-92 336.7
Cme09g01901 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.8e-38 154.8
Cme04g02367 . 41 157 RAV Transcription Factor Family AT1G13260 66.7 3.9e-37 152.5
Cme11g02307 . 97 205 RAV Transcription Factor Family AT1G13260 69.1 3.9e-37 152.5
Cme10g00289 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 1.0e-98 357.1
Cme09g00779 . 34 293 RAV Transcription Factor Family AT3G25730 65.3 1.4e-87 320.1
Cme10g00289 . 1 344 RAV Transcription Factor Family AT1G68840 61.5 1.1e-111 400.2
Cme09g00779 . 1 296 RAV Transcription Factor Family AT1G68840 58.4 4.1e-90 328.6
Cme09g01901 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.1e-38 156.8
Cme04g02367 . 41 159 RAV Transcription Factor Family AT1G68840 67.5 2.8e-38 156.4
Cme11g02307 . 96 212 RAV Transcription Factor Family AT1G68840 64.7 4.7e-38 155.6
Cme10g00289 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 1.0e-98 357.1
Cme09g00779 . 34 293 RAV Transcription Factor Family AT3G25730 65.3 1.4e-87 320.1
Cme02g01073 . 76 328 RAV Transcription Factor Family AT1G51120 56.7 5.9e-81 298.1
Cme02g00470 . 89 393 RAV Transcription Factor Family AT1G51120 52.2 1.2e-78 290.4
Cme04g02367 . 41 167 RAV Transcription Factor Family AT3G11580 68.2 2.2e-44 176.0
Cme11g02307 . 81 212 RAV Transcription Factor Family AT3G11580 56.9 2.1e-39 159.5
Cme09g01901 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.8e-39 159.1
Cme07g01632 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 8.1e-39 157.5
Cme09g01901 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 3.0e-42 169.5
Cme07g01632 . 63 186 RAV Transcription Factor Family AT4G01500 58.3 2.0e-38 156.8
Cme04g02367 . 1 164 RAV Transcription Factor Family AT2G36080 61.2 3.8e-49 191.4
Cme11g02307 . 93 227 RAV Transcription Factor Family AT2G36080 61.6 2.0e-42 169.1
Cme09g01901 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.2e-40 160.6
Cme07g01632 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Cme10g00289 . 179 302 RAV Transcription Factor Family AT2G36080 60.8 5.2e-38 154.5
Cme04g02367 . 41 241 RAV Transcription Factor Family AT5G06250 56.7 3.9e-53 205.3
Cme07g01632 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.5e-41 165.2
Cme09g01901 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Cme11g02307 . 96 205 RAV Transcription Factor Family AT5G06250 65.0 1.9e-39 159.8
Cme10g00289 . 179 298 RAV Transcription Factor Family AT5G06250 57.9 5.2e-37 151.8
Cme09g01901 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 4.0e-57 218.8
Cme11g02307 . 86 326 RAV Transcription Factor Family AT2G46870 50.2 1.1e-54 210.7
Cme10g00289 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cme04g02367 . 36 156 RAV Transcription Factor Family AT2G46870 63.7 7.1e-38 154.8
Cme02g01073 . 80 359 RAV Transcription Factor Family AT1G50680 54.2 6.6e-82 301.2
Cme02g00470 . 84 303 RAV Transcription Factor Family AT1G50680 62.7 2.0e-78 289.7
Cme09g01901 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 3.4e-53 205.7
Cme11g02307 . 94 326 RAV Transcription Factor Family AT3G61970 52.3 1.8e-51 199.9
Cme10g00289 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Cme10g00289 . 22 343 RAV Transcription Factor Family AT1G13260 66.8 3.0e-106 382.1
Cme09g00779 . 1 293 RAV Transcription Factor Family AT1G13260 61.8 1.5e-92 336.7
Cme09g01901 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.8e-38 154.8
Cme04g02367 . 41 157 RAV Transcription Factor Family AT1G13260 66.7 3.9e-37 152.5
Cme11g02307 . 97 205 RAV Transcription Factor Family AT1G13260 69.1 3.9e-37 152.5
Cme10g00289 . 1 344 RAV Transcription Factor Family AT1G68840 61.5 1.1e-111 400.2
Cme09g00779 . 1 296 RAV Transcription Factor Family AT1G68840 58.4 4.1e-90 328.6
Cme09g01901 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.1e-38 156.8
Cme04g02367 . 41 159 RAV Transcription Factor Family AT1G68840 67.5 2.8e-38 156.4
Cme11g02307 . 96 212 RAV Transcription Factor Family AT1G68840 64.7 4.7e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40889 PF02362 B3 1.30E-24 CL0405 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01073 Cme_Chr02 FPKM 0.0 0.0 0.189236 0.087672 0.0 0.0 0.0 0.0 0.0 0.0