Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01073 TTTCTTATTAGAGGAGTTTCTTTTAGTCCAGTACAAGTTAAAAACTCTAGGGAGCAGAAGGGAAGATGGTTGATTTTGATAGCATGGGATAGGGCCGAAACCGCCATGAAACAGGAGTTGTCAAGTATGATTTCAAAAGCCAGGACGAATGCAGTTGGAGACACTTTAGATTCAAGCTGCATCACCTGTCCACTCCCTACTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGCGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCTGAAAATGAGGCAGCTATGGCATATGATAGTGCTGCTATCAGAATCAGGAGTGGAGATTGCCATAGAAACTTTCCTTGGACAAAATTCACTATCGAAGAGCCTAACTTTCAGAAACTTTACACTACAGAAACTTTGCTTAATATGATAAAGGACGGTTCTTACAGAACTAAATTTTCTGAGTATTTAAGGGATTGTTCTGAAAGCACACAAACGTCGGTGAGTCCCTCCACAGAAAAGGCGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATACCAAAGAAGTACGCTGTTAAGTACTTTCCTCAAATATCAGCTAGTACAACAGAAAATGTAGAACCCGTTGATGATGATCGCGATGTGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGCTACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGTGGTTGGAATCGCTTTGTGAAGGAAAAACAGCTTAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCCTCAAGTGATTCTAAAACTACATTTTGTGTTGTAGATGTTAATAACCGTGACAACAGTGGTGGCCTGGTTGAGAATGAAACCACATGTAGCGAATTGCAGCTCAATTTGAGGCATGGAGAAGTTGAGGAATCGGTCTCGCCTAAGCACATAGACAATGAACTAAAAGATGAACGTGAAGTTAAG 1089 40.77 FLIRGVSFSPVQVKNSREQKGRWLILIAWDRAETAMKQELSSMISKARTNAVGDTLDSSCITCPLPTNGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTETLLNMIKDGSYRTKFSEYLRDCSESTQTSVSPSTEKAHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQISASTTENVEPVDDDRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAASSDSKTTFCVVDVNNRDNSGGLVENETTCSELQLNLRHGEVEESVSPKHIDNELKDEREVK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15752452 15754763 - MELO3C029441.2.1 Cme02g01073 320962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01073 363 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Cme02g01073 363 CDD B3_DNA 201 312 IPR003340 GO:0003677
Cme02g01073 363 Gene3D - 197 322 IPR015300 -
Cme02g01073 363 SUPERFAMILY DNA-binding pseudobarrel domain 201 312 IPR015300 -
Cme02g01073 363 PANTHER DNA-BINDING PROTEIN RAV1 36 356 - -
Cme02g01073 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 356 IPR044800 GO:0003700
Cme02g01073 363 ProSiteProfiles B3 DNA-binding domain profile. 202 316 IPR003340 GO:0003677
Cme02g01073 363 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
Cme02g01073 363 SMART B3_2 202 316 IPR003340 GO:0003677
Cme02g01073 363 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Cme02g01073 363 Pfam B3 DNA binding domain 202 311 IPR003340 GO:0003677
Cme02g01073 363 ProSiteProfiles AP2/ERF domain profile. 80 135 IPR001471 GO:0003700|GO:0006355
Cme02g01073 363 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Cme02g01073 363 Pfam AP2 domain 79 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00470 Cme-Chr2:4367391 Cme02g01073 Cme-Chr2:15752452 4.53E-104 dispersed
Cme02g01073 Cme-Chr2:15752452 Cme10g00289 Cme-Chr10:1878784 5.02E-56 dispersed
Cme02g01073 Cme-Chr2:15752452 Cme09g01901 Cme-Chr9:23146679 1.11E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40889 PF02362 B3 1.30E-24 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01073 K09287 - csv:101212246 643.654