Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01076 ATGCAGCCCTGTAGCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCCAAATATCTCTCCAAGACCTCCACGCCGACCACCATTTGAATCCTCCACCGCCCCAGATCCCGCCCTCTCATTTCCACCATTTCGATCCCTCCGCCGCTTCCAACGACGACTTCCTCGAACAAATGCTCAACACAATCCCTTCCTGTTCTTGGCCCGACCTCAATCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATTAATAAACCCTCTAGAGATATCTCCGATGATCCTCACCAGAATCACCTCACTGCTACTTCTCCCGCCGCTAAGGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCGAGAGGAATGTCTGGTTCTGCCGGAAATGGCGTTGCAGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTGGAAATGCCGACTTGGATCGCTCCCAAAACGACGTCGTTGATGGATCCTGTTTCCGTCCACCGAACTCGGGTGGTTCTCTTCAATCGAATAGTTTCGGAGCTCCGGGAAACGTGATGAATCAAACTCCAGGAGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAGAAGGTCAGAGCTCGTAGAGGCCAAGCTACTGACCCACACAGTATTGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGATAAAGCTTCGATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGGGGTGCAGCTGCCGTGGCTCCTCTAGTCGCTGACGTCTCCTCTGAGGGTGGCGGTGAGTGTATGCAAGGAAGTGGAGCCCAAGCTGGTGGCCGGAATTCCAACAATAATGGCAACGGCGGAAACCAAACGGCGTCCACCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCAAAGCTAATGGAGAAAGATATGGGATCAGCGATGCAGTATTTGCAAGGGAAAGGGCTTTGTCTCATGCCCATATCTCTAGCAACGGCCATCTCTACGTCCACGTGTCACTCCAGGAATCCCTTGATGAACGGCGGCGGCGGTGGCAGTCAACATCCCGTGATGGCATCCAACGGTGAAGGACCTTCGTCGCCGAGTATGTCGGTGCTGACTGTGCAATCGACAAGCATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTATCAAAGCCGTGA 1263 53.05 MQPCSREMQSLNSLLNHSQISLQDLHADHHLNPPPPQIPPSHFHHFDPSAASNDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHLTATSPAAKAAVMLQQQLLLSRGMSGSAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSNSFGAPGNVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGSQHPVMASNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15788112 15790849 - MELO3C010237.2.1 Cme02g01076 320965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01076 420 MobiDBLite consensus disorder prediction 288 323 - -
Cme02g01076 420 Pfam Helix-loop-helix DNA-binding domain 215 260 IPR011598 GO:0046983
Cme02g01076 420 MobiDBLite consensus disorder prediction 385 420 - -
Cme02g01076 420 SMART finulus 216 265 IPR011598 GO:0046983
Cme02g01076 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 270 IPR036638 GO:0046983
Cme02g01076 420 Gene3D - 204 267 IPR036638 GO:0046983
Cme02g01076 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Cme02g01076 420 MobiDBLite consensus disorder prediction 67 83 - -
Cme02g01076 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 373 - -
Cme02g01076 420 MobiDBLite consensus disorder prediction 67 98 - -
Cme02g01076 420 MobiDBLite consensus disorder prediction 161 213 - -
Cme02g01076 420 MobiDBLite consensus disorder prediction 298 323 - -
Cme02g01076 420 MobiDBLite consensus disorder prediction 370 420 - -
Cme02g01076 420 PANTHER TRANSCRIPTION FACTOR BHLH69 44 373 - -
Cme02g01076 420 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00118 Cme-Chr1:844087 Cme02g01076 Cme-Chr2:15788112 9.26E-21 dispersed
Cme02g00158 Cme-Chr2:1175971 Cme02g01076 Cme-Chr2:15788112 2.66E-62 dispersed
Cme02g01076 Cme-Chr2:15788112 Cme05g01833 Cme-Chr5:27184307 1.63E-59 dispersed
Cme03g02098 Cme-Chr3:28290488 Cme02g01076 Cme-Chr2:15788112 9.84E-20 dispersed
Cme09g00012 Cme-Chr9:86578 Cme02g01076 Cme-Chr2:15788112 4.85E-19 dispersed
Cme09g00932 Cme-Chr9:13028405 Cme02g01076 Cme-Chr2:15788112 8.91E-19 dispersed
Cme02g01076 Cme-Chr2:15788112 Cme07g00258 Cme-Chr7:1678327 1.47E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40890 PF00010 HLH 1.60E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01076 - - csv:101211609 778.089