Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01081 ATGACTGTGGAGGGTCATTCTGTTGCTGTAGTCGGTGATGATGGGGCTACTGATCATTTTCCTGTTGGGATGCGTGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTACTCGAATCTCTCCTCCGTAAATGCCAATATCATGTTACAACGACGAAGCAGTCCGTTGAGGCTTTGAGGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCACACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAACACGTGATTCGGAGAAAGAAGCTTGAACCGAAGGCAAAAAACAAGTTCCCTAGTCAAGATAAGGTTCGAAATGGAGGCAATGAAGTTGAACAAGGTTTCTCACCGACGAGTAATGCAGACAGTGCAAAATTCAACAGGAAACGGAAGGACCAAGATGATGATGACGACGACGAAGGAAAAGAGAATGGGCTTGATAGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTATGGTCAGTTGAGTTGCATCGGAAGTTCGTTTCGGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCAAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCCGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGCAAAGATGGCACTTACATGCGAATGGGTTCACTTGATGGATATGGAGACTTACACGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCGTTGTCCTCTTATTCACCTGTAGGAATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAACCTGCGTGGAATCACTTCATCTGGACTGATCCAGCAAAACTCCCAAAATTTGAACTGCGCCATTAATAACCTTGGCAAACTCCAACCAACTACAATGTTGTCTCCTAACCAAACTACTAATCTGTTGCAAGGGATTCCAACATCACTTGAGATCGGTCAGTTGCAACACAGCAAGTCCACCACTTCCATTGGAGACTTCAATACAATGAATGAGACTTCCGGGTTTGGAGTTCCCAACAGTTTTCCTGAAACTAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGGTGTTACAAGGAACGATGCCAACATATGGAAATCAGACCTCCCTTAGAGTCGATCCGCTAAATGGAGAAACTTTTGACATAGACGTTGGTGGTTCAAACTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACATTTGTCTAGATTCTCAGCAACTTCATTGACCACCAATGAAGCTTATCCGAGTGATCAATTGCATTCAATGAACTCAGGCATTTCTTCTAACCCCTCGACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGGTTCAGCTTCCTTACTGGATTCAAGAGACGTCCAATGCCAGGCAGGGGTAGTTGGCAGTGTTATTCAATCTATGAATACCATGCCAAAGCAGAGTTGGGAAGAGCATAAACATGGCTACAGTCGAAACATGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCCAGCGATGGGAGTCCAACCCCCTTAAACCAGAGTTTCAATCAGAATAGTGTCGTACGTGATAGAAAGGTTGGTTCATCTTTAATAGTCCCATCAAATGTTGCGTCACTGTCCTTCCCTCAACATGGTGTGGTTGAAAAATTGGGTCCCAACACAAAGACAAATGTGGATGGAAACTACCTTTTGAATCAGATGAAGTCACACGATGGATCAATTCAAGGCAGTTTCGAGTCCTTGGATGATATAATGAATTCGATAATCAAACGGGTATAG 2028 43.98 MTVEGHSVAVVGDDGATDHFPVGMRVLAVDDDPICLKVLESLLRKCQYHVTTTKQSVEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQDKVRNGGNEVEQGFSPTSNADSAKFNRKRKDQDDDDDDEGKENGLDSDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRMGSLDGYGDLHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMNLRGITSSGLIQQNSQNLNCAINNLGKLQPTTMLSPNQTTNLLQGIPTSLEIGQLQHSKSTTSIGDFNTMNETSGFGVPNSFPETRANIGNSTYSVSPAPLVLQGTMPTYGNQTSLRVDPLNGETFDIDVGGSNFLDPDPSNGNWQGAAHLSRFSATSLTTNEAYPSDQLHSMNSGISSNPSTIGNISVDFSSRSAGSASLLDSRDVQCQAGVVGSVIQSMNTMPKQSWEEHKHGYSRNMQHNLGAINSLVSSDGSPTPLNQSFNQNSVVRDRKVGSSLIVPSNVASLSFPQHGVVEKLGPNTKTNVDGNYLLNQMKSHDGSIQGSFESLDDIMNSIIKRV 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15840669 15844113 - MELO3C010245.2.1 Cme02g01081 320970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01081 675 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cme02g01081 675 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cme02g01081 675 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cme02g01081 675 MobiDBLite consensus disorder prediction 147 210 - -
Cme02g01081 675 PIRSF RR_ARR_type-B 1 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme02g01081 675 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cme02g01081 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 674 - -
Cme02g01081 675 CDD REC_typeB_ARR-like 26 140 - -
Cme02g01081 675 Gene3D - 24 181 - -
Cme02g01081 675 Gene3D - 207 270 - -
Cme02g01081 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 674 IPR045279 GO:0009736
Cme02g01081 675 SMART REC_2 24 136 IPR001789 GO:0000160
Cme02g01081 675 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cme02g01081 675 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Cme02g01081 675 MobiDBLite consensus disorder prediction 157 178 - -
Cme02g01081 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01081 K14491 ARR-B; two-component response regulator ARR-B family - csv:101213687 1294.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02225 Cme-Chr1:30984559 Cme02g01081 Cme-Chr2:15840669 2.68E-13 dispersed
Cme02g01081 Cme-Chr2:15840669 Cme06g00764 Cme-Chr6:5045134 2.70E-109 dispersed
Cme11g00507 Cme-Chr11:5113944 Cme02g01081 Cme-Chr2:15840669 1.30E-14 dispersed
Cme11g01332 Cme-Chr11:20225494 Cme02g01081 Cme-Chr2:15840669 4.26E-22 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme02g01081 Cme-Chr2:15840669 0 transposed
Cme08g02346 Cme-Chr8:30431867 Cme02g01081 Cme-Chr2:15840669 6.62E-23 transposed
Cme09g02021 Cme-Chr9:23891816 Cme02g01081 Cme-Chr2:15840669 1.69E-23 transposed
Cme12g01975 Cme-Chr12:25560215 Cme02g01081 Cme-Chr2:15840669 1.31E-18 transposed
Cme02g01081 Cme-Chr2:15840669 Cme07g00108 Cme-Chr7:673597 8.77E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g640 Blo01g00600 Blo16g00870 Bda01g01967 Bda11g00074 Bpe01g00636 Bpe02g02148 Bma07g00742 . Cmo10g00516 Cmo11g00476 . . . . Sed11g0169 Cpe04g01239 Cpe18g00551 Bhi02g00898 Tan09g1542 Cmetu02g1717 . . . . . . . . . . . Cone2ag0549 Cone16ag0459 Cone4ag0611 . Lsi06g01039 . . Cme02g01081 Blo08g00530 . Bda02g00326 Bda09g00841 Bpe08g00654 Bpe13g01134 Bma01g00295 Bma06g00994 . . . Cma10g00483 . Car10g00447 . . . . . . . . . . Cla06g01213 Cam06g1357 Cec06g1400 Cco06g1405 Clacu06g1305 Cmu06g1276 Cre06g2086 . Csa01g01861 Chy02g02099 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme10g00486 . 1 175 Response Regulator Gene Family AT1G59940 65.4 2.7e-56 216.1
Cme02g01933 . 10 159 Response Regulator Gene Family AT1G59940 62.9 5.1e-47 185.3
Cme09g01191 . 5 150 Response Regulator Gene Family AT1G59940 61.6 5.4e-41 165.2
Cme10g00486 . 16 185 Response Regulator Gene Family AT1G10470 66.5 1.9e-54 209.5
Cme02g01933 . 30 168 Response Regulator Gene Family AT1G10470 67.6 5.6e-46 181.4
Cme09g01191 . 5 155 Response Regulator Gene Family AT1G10470 57.7 1.0e-39 160.6
Cme08g01358 CCT 77 214 Response Regulator Gene Family AT1G10470 60.1 1.9e-38 156.4
Cme02g01933 . 31 189 Response Regulator Gene Family AT3G48100 68.8 6.0e-53 204.1
Cme10g00486 . 29 162 Response Regulator Gene Family AT3G48100 72.4 5.7e-51 197.6
Cme09g01191 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.5e-40 162.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT3G48100 58.6 1.3e-39 159.8
Cme02g01933 . 31 164 Response Regulator Gene Family AT5G62920 77.6 7.5e-51 197.2
Cme10g00486 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.1e-49 193.4
Cme09g01191 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.1e-41 164.9
Cme08g01358 CCT 77 216 Response Regulator Gene Family AT5G62920 58.6 2.9e-39 158.7
Cme02g01933 . 30 163 Response Regulator Gene Family AT1G19050 75.4 5.4e-50 194.5
Cme10g00486 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.2e-44 176.8
Cme08g01358 CCT 75 216 Response Regulator Gene Family AT1G19050 56.3 9.5e-39 157.1
Cme09g01191 . 7 152 Response Regulator Gene Family AT1G19050 54.4 4.0e-37 151.8
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT2G41310 53.8 8.1e-60 227.3
Cme04g02093 CCT 1 181 Response Regulator Gene Family AT2G41310 63.5 5.6e-53 204.5
Cme09g01191 . 1 151 Response Regulator Gene Family AT2G41310 65.6 6.5e-49 191.0
Cme03g00540 . 12 160 Response Regulator Gene Family AT2G41310 60.7 2.8e-44 175.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT2G41310 58.9 2.9e-41 165.6
Cme02g01933 . 29 160 Response Regulator Gene Family AT2G41310 62.6 5.0e-41 164.9
Cme10g00026 . 105 264 Response Regulator Gene Family AT2G41310 58.2 8.5e-41 164.1
Cme08g01358 CCT 68 320 Response Regulator Gene Family AT3G57040 54.5 7.4e-64 240.7
Cme04g02093 CCT 1 179 Response Regulator Gene Family AT3G57040 66.5 6.9e-54 207.6
Cme09g01191 . 1 154 Response Regulator Gene Family AT3G57040 66.2 9.4e-51 197.2
Cme03g00540 . 19 189 Response Regulator Gene Family AT3G57040 55.7 7.7e-45 177.6
Cme10g00486 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.2e-43 172.2
Cme02g01933 . 26 160 Response Regulator Gene Family AT3G57040 61.8 1.4e-41 166.8
Cme10g00026 . 110 264 Response Regulator Gene Family AT3G57040 60.0 2.3e-41 166.0
Cme02g01933 . 25 183 Response Regulator Gene Family AT1G74890 69.9 1.2e-52 203.4
Cme10g00486 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.5e-47 185.7
Cme08g01358 CCT 75 209 Response Regulator Gene Family AT1G74890 60.0 4.3e-39 158.3
Cme09g01191 . 7 144 Response Regulator Gene Family AT1G74890 58.7 5.6e-39 157.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.5e-39 159.5
Cme02g01933 . 30 161 Response Regulator Gene Family AT2G40670 59.3 1.4e-37 152.9
Cme10g00486 . 26 159 Response Regulator Gene Family AT3G56380 54.8 2.9e-40 161.8
Cme02g01933 . 25 161 Response Regulator Gene Family AT3G56380 59.4 3.8e-40 161.4
Cme09g01191 . 11 152 Response Regulator Gene Family AT3G56380 57.3 4.6e-38 154.5
Cme07g00108 . 52 346 Response Regulator Gene Family AT3G16857 50.8 7.0e-61 232.3
Cme03g02198 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cme05g01902 . 59 316 Response Regulator Gene Family AT3G16857 51.8 5.9e-52 202.6
Cme06g00764 . 18 241 Response Regulator Gene Family AT4G16110 66.5 3.0e-78 290.0
Cme07g00108 . 12 233 Response Regulator Gene Family AT4G16110 65.8 1.5e-61 234.6
Cme03g02198 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.1e-59 225.3
Cme02g01081 . 17 249 Response Regulator Gene Family AT4G16110 53.4 8.5e-57 218.8
Cme05g01902 . 12 266 Response Regulator Gene Family AT4G16110 52.6 1.8e-51 201.1
Cme11g02055 . 1 141 Response Regulator Gene Family AT4G16110 56.4 2.8e-36 150.6
Cme02g01081 . 18 383 Response Regulator Gene Family AT4G31920 54.5 4.4e-91 332.4
Cme07g00108 . 1 413 Response Regulator Gene Family AT4G31920 52.0 5.4e-89 325.5
Cme05g01902 . 13 340 Response Regulator Gene Family AT4G31920 55.1 1.5e-78 290.8
Cme06g00764 . 16 270 Response Regulator Gene Family AT4G31920 53.8 1.6e-69 260.8
Cme03g02198 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.3e-62 236.1
Cme06g00764 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.4e-39 159.1
Cme07g00108 . 93 255 Response Regulator Gene Family AT1G67710 50.9 1.5e-36 151.0
Cme02g01081 . 16 390 Response Regulator Gene Family AT2G25180 55.9 1.2e-102 370.9
Cme06g00764 . 18 290 Response Regulator Gene Family AT2G25180 55.4 4.6e-78 289.3
Cme03g02198 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.7e-69 258.5
Cme11g02055 . 1 174 Response Regulator Gene Family AT2G25180 52.0 3.2e-39 160.2
Cme06g00764 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.6e-53 205.7
Cme02g01081 . 79 303 Response Regulator Gene Family AT2G01760 53.1 8.2e-50 194.5
Cme03g02198 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cme03g02198 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.4e-62 235.7
Cme12g01975 . 6 555 Response Regulator Gene Family AT5G61380 51.2 8.5e-144 507.7
Cme08g02346 . 38 206 Response Regulator Gene Family AT5G60100 68.6 9.9e-56 214.5
Cme08g02346 . 67 206 Response Regulator Gene Family AT5G24470 55.7 3.9e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003972 2 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40891 PF00072 Response_reg 9.10E-26 CL0304 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01081 Cme_Chr02 FPKM 7.842759 7.858598 10.639281 9.18716 4.636652 5.50212 4.751946 17.019436 18.927534 18.955891