Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01081 ATGACTGTGGAGGGTCATTCTGTTGCTGTAGTCGGTGATGATGGGGCTACTGATCATTTTCCTGTTGGGATGCGTGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTACTCGAATCTCTCCTCCGTAAATGCCAATATCATGTTACAACGACGAAGCAGTCCGTTGAGGCTTTGAGGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCACACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAACACGTGATTCGGAGAAAGAAGCTTGAACCGAAGGCAAAAAACAAGTTCCCTAGTCAAGATAAGGTTCGAAATGGAGGCAATGAAGTTGAACAAGGTTTCTCACCGACGAGTAATGCAGACAGTGCAAAATTCAACAGGAAACGGAAGGACCAAGATGATGATGACGACGACGAAGGAAAAGAGAATGGGCTTGATAGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTATGGTCAGTTGAGTTGCATCGGAAGTTCGTTTCGGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCAAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCCGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGCAAAGATGGCACTTACATGCGAATGGGTTCACTTGATGGATATGGAGACTTACACGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCGTTGTCCTCTTATTCACCTGTAGGAATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAACCTGCGTGGAATCACTTCATCTGGACTGATCCAGCAAAACTCCCAAAATTTGAACTGCGCCATTAATAACCTTGGCAAACTCCAACCAACTACAATGTTGTCTCCTAACCAAACTACTAATCTGTTGCAAGGGATTCCAACATCACTTGAGATCGGTCAGTTGCAACACAGCAAGTCCACCACTTCCATTGGAGACTTCAATACAATGAATGAGACTTCCGGGTTTGGAGTTCCCAACAGTTTTCCTGAAACTAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGGTGTTACAAGGAACGATGCCAACATATGGAAATCAGACCTCCCTTAGAGTCGATCCGCTAAATGGAGAAACTTTTGACATAGACGTTGGTGGTTCAAACTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACATTTGTCTAGATTCTCAGCAACTTCATTGACCACCAATGAAGCTTATCCGAGTGATCAATTGCATTCAATGAACTCAGGCATTTCTTCTAACCCCTCGACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGGTTCAGCTTCCTTACTGGATTCAAGAGACGTCCAATGCCAGGCAGGGGTAGTTGGCAGTGTTATTCAATCTATGAATACCATGCCAAAGCAGAGTTGGGAAGAGCATAAACATGGCTACAGTCGAAACATGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCCAGCGATGGGAGTCCAACCCCCTTAAACCAGAGTTTCAATCAGAATAGTGTCGTACGTGATAGAAAGGTTGGTTCATCTTTAATAGTCCCATCAAATGTTGCGTCACTGTCCTTCCCTCAACATGGTGTGGTTGAAAAATTGGGTCCCAACACAAAGACAAATGTGGATGGAAACTACCTTTTGAATCAGATGAAGTCACACGATGGATCAATTCAAGGCAGTTTCGAGTCCTTGGATGATATAATGAATTCGATAATCAAACGGGTATAG 2028 43.98 MTVEGHSVAVVGDDGATDHFPVGMRVLAVDDDPICLKVLESLLRKCQYHVTTTKQSVEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQDKVRNGGNEVEQGFSPTSNADSAKFNRKRKDQDDDDDDEGKENGLDSDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRMGSLDGYGDLHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMNLRGITSSGLIQQNSQNLNCAINNLGKLQPTTMLSPNQTTNLLQGIPTSLEIGQLQHSKSTTSIGDFNTMNETSGFGVPNSFPETRANIGNSTYSVSPAPLVLQGTMPTYGNQTSLRVDPLNGETFDIDVGGSNFLDPDPSNGNWQGAAHLSRFSATSLTTNEAYPSDQLHSMNSGISSNPSTIGNISVDFSSRSAGSASLLDSRDVQCQAGVVGSVIQSMNTMPKQSWEEHKHGYSRNMQHNLGAINSLVSSDGSPTPLNQSFNQNSVVRDRKVGSSLIVPSNVASLSFPQHGVVEKLGPNTKTNVDGNYLLNQMKSHDGSIQGSFESLDDIMNSIIKRV 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15840669 15844113 - MELO3C010245.2.1 Cme02g01081 320970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01081 675 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cme02g01081 675 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cme02g01081 675 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cme02g01081 675 MobiDBLite consensus disorder prediction 147 210 - -
Cme02g01081 675 PIRSF RR_ARR_type-B 1 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cme02g01081 675 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cme02g01081 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 674 - -
Cme02g01081 675 CDD REC_typeB_ARR-like 26 140 - -
Cme02g01081 675 Gene3D - 24 181 - -
Cme02g01081 675 Gene3D - 207 270 - -
Cme02g01081 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 674 IPR045279 GO:0009736
Cme02g01081 675 SMART REC_2 24 136 IPR001789 GO:0000160
Cme02g01081 675 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cme02g01081 675 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Cme02g01081 675 MobiDBLite consensus disorder prediction 157 178 - -
Cme02g01081 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02225 Cme-Chr1:30984559 Cme02g01081 Cme-Chr2:15840669 2.68E-13 dispersed
Cme02g01081 Cme-Chr2:15840669 Cme06g00764 Cme-Chr6:5045134 2.70E-109 dispersed
Cme11g00507 Cme-Chr11:5113944 Cme02g01081 Cme-Chr2:15840669 1.30E-14 dispersed
Cme11g01332 Cme-Chr11:20225494 Cme02g01081 Cme-Chr2:15840669 4.26E-22 dispersed
Cme05g01902 Cme-Chr5:27699044 Cme02g01081 Cme-Chr2:15840669 0 transposed
Cme08g02346 Cme-Chr8:30431867 Cme02g01081 Cme-Chr2:15840669 6.62E-23 transposed
Cme09g02021 Cme-Chr9:23891816 Cme02g01081 Cme-Chr2:15840669 1.69E-23 transposed
Cme12g01975 Cme-Chr12:25560215 Cme02g01081 Cme-Chr2:15840669 1.31E-18 transposed
Cme02g01081 Cme-Chr2:15840669 Cme07g00108 Cme-Chr7:673597 8.77E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40891 PF00072 Response_reg 9.10E-26 CL0304 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01081 K14491 - csv:101213687 1294.64