Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01197 ATGAAGCGACTTACTAGAAAAGTTGGGAAGTATGAGGTGGGGAGGACCGTTGGGGAAGGGACGTTTGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCTATGAAAGTTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTTAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTCCCAGAAATTGAGTCTAGACGATACTTTCACCAGCTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTATCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGATGATGGAAATCTGAAAGTTTCCGACTTTGGGCTGAGTGCACTGTCTCAACAAGGTGTTGACCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGTGCTTAGTGGTCAGGGTTACGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACGGACCTTCCCACCCTAAACATGAAGATAAATGCAGCGGAGTATTCCTGTCCCTATTGGTTTTCACCTGGTGCAAAGTCCTTGATAGAGAAGATCCTTGATCCGAATCCTAAAACTCGAATTCGGATCGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACGTCCCTGCTAAACTTGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGATGAATATGTAGCCGATCAATCAGAAAAAAATGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTATCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAGACCTGCTAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAACAATGGGATTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACCGGACACAGGGTTGCACAGTTTGCCGCTGTGCTGGAGGTAATCTTATAG 1182 42.47 MKRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKVLAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEIESRRYFHQLIDAVAHCHSKGVYHRDLKPENLLLDDDGNLKVSDFGLSALSQQGVDLLHTTCGTPNYVAPEVLSGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSPGAKSLIEKILDPNPKTRIRIEEIRKDPWFRRNYVPAKLGEDEEVNLDDVRAVFDDIEDEYVADQSEKNDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRRPANFIMSSIEAVAETMGLNVHTRNFKTRLERRTGHRVAQFAAVLEVIL 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17233080 17239723 + MELO3C010334.2.1 Cme02g01197 321086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01197 393 Gene3D Kinase associated domain 1, KA1 313 392 - -
Cme02g01197 393 PANTHER - 5 391 - -
Cme02g01197 393 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Cme02g01197 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cme02g01197 393 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Cme02g01197 393 CDD CIPK_C 311 392 - -
Cme02g01197 393 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01197 393 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01197 393 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 391 - -
Cme02g01197 393 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01197 393 SUPERFAMILY Protein kinase-like (PK-like) 8 286 IPR011009 -
Cme02g01197 393 Pfam NAF domain 307 366 IPR004041 GO:0007165
Cme02g01197 393 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01197 Cme-Chr2:17233080 Cme03g01781 Cme-Chr3:26306656 0 dispersed
Cme02g01197 Cme-Chr2:17233080 Cme08g00116 Cme-Chr8:871731 1.76E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64689 PF00069 Pkinase 3.00E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01197 - - csv:101203676 759.599