Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01203 | ATGCCAAAGTGTAAGAAATTTAGAGGTGTTAGGCAACGTCATTGGGGTTCTTGGGTTTCGGAAATTCGCCACCCTCTATTGAAGAGGAGAATATGGCTTGGGACGTTTGAGACAGCGGAGCAAGCAGCCAAAGCGTACGACCAAGCTGCGGTTTTGATGAGTGGTCGGAACGCGAAAACCAATTTCCCTACTTCTTCTTCCAATGGAGAGACTATCAACAATATTGATACAACGACCAAGGATTCACCAAAGGGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGCTGCCGCACTCCTTCACCGTCAATGACATGCTTGAGGCTCGACACTGAGAATTCCAACATTGGTGTTTGGCAGAAACGTGCTGGGCAACAGTCGACATCCAACTGGGTTATGACGGTCGAGCTAGGAAACAAGAAGAGGCTCAGTAATGAGAACGAGAACGAAAACGATAACAATGCAGATTCTGATATGATGGCTGTGGTTGCTTCCGATCATCATCAGTCTCCGGTGGTGGAAGTGGCGGAGATTCCGTCGGAGTTGGATGAAGAAGAGAAAATGTTAGCGTTGCAAATGGTGGAGGAACTGCTTCACATCAACTTTGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG | 663 | 45.55 | MPKCKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEQAAKAYDQAAVLMSGRNAKTNFPTSSSNGETINNIDTTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQQSTSNWVMTVELGNKKRLSNENENENDNNADSDMMAVVASDHHQSPVVEVAEIPSELDEEEKMLALQMVEELLHINFDPAEPFEIQQGKDINYL | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 17354064 | 17355194 | + | MELO3C010341.2.1 | Cme02g01203 | 321092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01203 | 220 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 204 | - | - | |
Cme02g01203 | 220 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Cme02g01203 | 220 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Cme02g01203 | 220 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01203 | 220 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 204 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01203 | Cme05g01917 | CCT | |
Cme02g01203 | Cme05g01917 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01203 | Cme-Chr2:17354064 | Cme07g00103 | Cme-Chr7:640263 | 7.30E-31 | dispersed | |
Cme02g01203 | Cme-Chr2:17354064 | Cme04g00406 | Cme-Chr4:3219740 | 9.82E-75 | wgd | |
Cme02g01203 | Cme-Chr2:17354064 | Cme05g01917 | Cme-Chr5:27852221 | 2.71E-79 | wgd | |
Cme02g01203 | Cme-Chr2:17354064 | Cme07g02066 | Cme-Chr7:25529775 | 4.25E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40894 | PF00847 | AP2 | 2.40E-11 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01203 | - | - | csv:101206565 | 385.956 |