Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01203 ATGCCAAAGTGTAAGAAATTTAGAGGTGTTAGGCAACGTCATTGGGGTTCTTGGGTTTCGGAAATTCGCCACCCTCTATTGAAGAGGAGAATATGGCTTGGGACGTTTGAGACAGCGGAGCAAGCAGCCAAAGCGTACGACCAAGCTGCGGTTTTGATGAGTGGTCGGAACGCGAAAACCAATTTCCCTACTTCTTCTTCCAATGGAGAGACTATCAACAATATTGATACAACGACCAAGGATTCACCAAAGGGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGCTGCCGCACTCCTTCACCGTCAATGACATGCTTGAGGCTCGACACTGAGAATTCCAACATTGGTGTTTGGCAGAAACGTGCTGGGCAACAGTCGACATCCAACTGGGTTATGACGGTCGAGCTAGGAAACAAGAAGAGGCTCAGTAATGAGAACGAGAACGAAAACGATAACAATGCAGATTCTGATATGATGGCTGTGGTTGCTTCCGATCATCATCAGTCTCCGGTGGTGGAAGTGGCGGAGATTCCGTCGGAGTTGGATGAAGAAGAGAAAATGTTAGCGTTGCAAATGGTGGAGGAACTGCTTCACATCAACTTTGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 663 45.55 MPKCKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEQAAKAYDQAAVLMSGRNAKTNFPTSSSNGETINNIDTTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQQSTSNWVMTVELGNKKRLSNENENENDNNADSDMMAVVASDHHQSPVVEVAEIPSELDEEEKMLALQMVEELLHINFDPAEPFEIQQGKDINYL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17354064 17355194 + MELO3C010341.2.1 Cme02g01203 321092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01203 220 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 204 - -
Cme02g01203 220 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Cme02g01203 220 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cme02g01203 220 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cme02g01203 220 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cme02g01203 220 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cme02g01203 220 MobiDBLite consensus disorder prediction 61 80 - -
Cme02g01203 220 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cme02g01203 220 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cme02g01203 220 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Cme02g01203 220 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01203 Cme05g01917 CCT
Cme02g01203 Cme05g01917 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01203 Cme-Chr2:17354064 Cme07g00103 Cme-Chr7:640263 7.30E-31 dispersed
Cme02g01203 Cme-Chr2:17354064 Cme04g00406 Cme-Chr4:3219740 9.82E-75 wgd
Cme02g01203 Cme-Chr2:17354064 Cme05g01917 Cme-Chr5:27852221 2.71E-79 wgd
Cme02g01203 Cme-Chr2:17354064 Cme07g02066 Cme-Chr7:25529775 4.25E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40894 PF00847 AP2 2.40E-11 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01203 - - csv:101206565 385.956