Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01250 ATGGAGGATAAGATAGCCCACATCATTTCTCTTTCCTTAATCCTCCTCCTCATCCTTCTCCTCATTCTCGCTCGAATTTTCCTCAAATTTTCCAAAGCTTTTTTCCTCATTTGCGGCATCGATGTCTCCCTCATCGCCGCTATCTTGGTCTACATGGTCATCCGACTACGCTTCAACCGCAGAAGAAAACAGCTCGAATCCCAGATACTTTCCGAAGGTCGAGAGCTTCGGATCGAGTATAGTTTCTTAAGAAAAGTCGCCGGAGTTCCCACCAAGTTCCGCTACAAAGAGCTCGAGGAAGCCACTGACTACTTCCGAGCGTTGATAGGTAAAGGATCCTCCGGTTCTGTCTTCAAAGGAATCCTCAAAGACGGTACTGCCGTGGCTGTCAAGCGGATCGAAGGTGAAAGTCAAGGAGACAAGGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAGCATGTAAATCTCGTTCGTCTAATTGGTTACTGTACTAATTCATCTGGACCTCGATTTCTTGTTTACGAATTCGTACCGAACGGATCTTTAGATTGCTGGATTTTTCCTAAAAAACCTACACACAAGAATCGAAATCGCCCTGGCGGTTGCTTAGCTTGGGATCTTAGATACAGTGTCGCCATTGATGTTGCTAAAGCCCTAGCTTACCTTCACCATGATTGCCGATCCAGAATCTTACACCTCGATGTGAAACCAGAAAACATCCTTTTAGATGAAAATTACAGAGCAATCGTTTCGGATTTTGGCCTATCGAAGCTGATGGGGAAAGACGAGAGCCGAATAATGATATCGATGAGAGGAACGAGGGGATATTTAGCTCCGGAATGGCTATTGGAGAACGGAATTTCAGAGAAATCAGATGTATACAGCTACGGAATGGTTCTTCTGGAATTAGTCGGAGGTCAGAGAAACGTAAGCGTAGTTGAAAATGGAGAAGGGAGATCTAAGAAGAAATGGCAGTATTTTCCCCGAATCGTGAGTGCGAAGATGAAGGAAGGGAAATTAATGGAAGCTGTGGATCAACAGCTGTTGGAAACCGGGACGATAGACGAGAGAGAGGTACGGAAACTGGTTTGTGTGGGTTTATGGTGTATACAAGAACAGGCGAAGCTGAGGCCGACGATGGCGATGGTGGTGGATATGCTTGAAGGCCGCGTCGCGGTGGAGGAGCCGCCGGATACTGAAATGCTCGTCGTTGATTTGTTGTCGATTGATGAAGAGATGATGAATAGTGACGAGAAACCGAAGATTGTTCCGTTTAGAGAACGGATGGACGATAGAAATGTTCCTTCGTCTTCATCGACGCCGTGTTCTTACGCCTTCTCTATACTCTCCGCCCGGTGA 1365 46.52 MEDKIAHIISLSLILLLILLLILARIFLKFSKAFFLICGIDVSLIAAILVYMVIRLRFNRRRKQLESQILSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGKGSSGSVFKGILKDGTAVAVKRIEGESQGDKEFRAEVSAIASVQHVNLVRLIGYCTNSSGPRFLVYEFVPNGSLDCWIFPKKPTHKNRNRPGGCLAWDLRYSVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRAIVSDFGLSKLMGKDESRIMISMRGTRGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEGRSKKKWQYFPRIVSAKMKEGKLMEAVDQQLLETGTIDEREVRKLVCVGLWCIQEQAKLRPTMAMVVDMLEGRVAVEEPPDTEMLVVDLLSIDEEMMNSDEKPKIVPFRERMDDRNVPSSSSTPCSYAFSILSAR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18049485 18050982 - MELO3C026637.2.1 Cme02g01250 321139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01250 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Cme02g01250 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01250 454 ProSiteProfiles Protein kinase domain profile. 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01250 454 Gene3D Transferase(Phosphotransferase) domain 1 179 403 - -
Cme02g01250 454 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Cme02g01250 454 PANTHER RECEPTOR-LIKE KINASE 1 454 - -
Cme02g01250 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 454 - -
Cme02g01250 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Cme02g01250 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Cme02g01250 454 SMART serkin_6 103 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01453 Cme-Chr1:18835362 Cme02g01250 Cme-Chr2:18049485 4.49E-40 dispersed
Cme02g01250 Cme-Chr2:18049485 Cme04g00409 Cme-Chr4:3259627 1.63E-99 dispersed
Cme03g00186 Cme-Chr3:2247508 Cme02g01250 Cme-Chr2:18049485 1.95E-38 dispersed
Cme02g01250 Cme-Chr2:18049485 Cme03g01614 Cme-Chr3:25043411 3.67E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64690 PF00069 Pkinase 5.10E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01250 - - csv:101211041 831.247