Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01258 ATGGAGTCCCTTAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGTCAAGAAGAGCTTGAGCAACTCTCCAGAGACGGTAGTCAGTATAGTCTTACCACTGGAATACTTCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTCAAGCTCCGGCGTTTTATTATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCGCCACTCTCTGTTACAGACAATGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTTGCTTACCTTGATAAAACCACCTATTTACTTGTTGATGAACCCAAGAAGATTGCTCTGAAGTATGCAAGGACATGGCTGATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTCCGCCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTCTGGCGTCTCCGAAGAGTCAGTGCTCTTTTCTCCAGACTGGAAAAGGATAGGAACTATAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCTGCATGTTTCTATTATCTCCTTGCTGCTCGTTATCATGACCCAAAAAACACATGGATTGGAGCATCCATGGAAAACTTTCTGGACCAAAGTTTGTGGATTAGATATGTCACTTCCATTTATTGGTCTATCACTACCCTAACTACTGTTGGCTATGGCGATTTGCATCCTGTGAATACAAGGGAGATGGTTTTTGACATATTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTAATTGGAAATATGACCAACTTAGTTGTCCATGGAACCAGTAGAACTAGAAAATTCAGGGATACGATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTCTCCGTTTACAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTACTTTTTCAGCTGGTGTCAGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGATGTAATTTTACAAAATGAAGCCCCAACAGACTTCTACATTCTTGTCACGGGTGCTGTGGCAATTAATTTACTGACTAAATTGCTCCAATACTTGCAGGTTGTTGGAGAGGCTAAAACTGGTGATCTTTGTGGAGAGATTGGGGTGTTATGTTACAGGCCACAATTGTTTACTGTTCGTACAAAGCGATTGAGTCAGTTGCTGCGTCTAAATCGGACAGCTTTTCTGAATATTGTTCAATCCAATGTCGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCATTTGAAGGACTTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTTAGTCTTTGTTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGACAATTCCGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAAAACTGTGTGCTTCTATTGCTAGACTATGGAGCAGATCCCAATAGTAGAGATTCAGATGGGGTTGTACCATTATGGGAGGCGATACTCGGTGGCCATGAGGCAGTAGCTCAGCTACTTATGGACAATGGTGCTAACCTTCGGTCAGGAGATGTTGGACACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTCACCGATATGGAGGTGACGTTACGAGTGCTAGGAACAATGGAACGACTGCTTTGCATGTTGCTGTTTGTGAAGACAACATTGAGATCGTCAAGTTCCTTCTCAAACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCGAGAGATTTAGCAGACCAACAAGGACATGAAGGAATTAAAAACCTCTTCCAAACAACAAAAGAATCAAAATCTCAATCTGTTGTTGCAATTCCAGAGAAGCAGACCGGTATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGCCCGCAACCTCAGGAAGCCAATGATGGTTCATGGCCAGGTCATTCTCGTCCCCGTCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACAGTCAGGGGAGAAAGGCATCCCTTTTCCTGATAACCAAACCAGTTTAGAGAACTCTGGAACCAACCCTGCAAGGGTGATAGTAAGCTGTCCAGAGATCGGTGAAGTTGGCGGGAAGTTGGTGCTGCTTCCAGAAAGTTACAACGAGCTGCTCGAGATTGGTTTGAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAAGTCATTAGGGATGGTGATCATCTTGTTTTTGTCAGTGATGGAAGAACCACATAA 2628 42.85 MESLRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKKIALKYARTWLIFDVISTIPSELAQKISPPPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLLAARYHDPKNTWIGASMENFLDQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPLRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVAINLLTKLLQYLQVVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNSGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGVVPLWEAILGGHEAVAQLLMDNGANLRSGDVGHFACTAAEQNNLQLLKEIHRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEGIKNLFQTTKESKSQSVVAIPEKQTGIRFLGRFTSEPMIRPQPQEANDGSWPGHSRPRRRTNNFHNSLFGIMSAAQSGEKGIPFPDNQTSLENSGTNPARVIVSCPEIGEVGGKLVLLPESYNELLEIGLKKYGIMATKVLNKDGAAIEDIEVIRDGDHLVFVSDGRTT 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18174400 18179954 + MELO3C026629.2.1 Cme02g01258 321147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01258 875 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Cme02g01258 875 ProSiteProfiles Ankyrin repeat region circular profile. 659 690 - -
Cme02g01258 875 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Cme02g01258 875 SUPERFAMILY Ankyrin repeat 533 712 IPR036770 -
Cme02g01258 875 PANTHER POTASSIUM CHANNEL AKT1 6 874 IPR045319 GO:0005249|GO:0006813
Cme02g01258 875 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme02g01258 875 ProSiteProfiles cAMP/cGMP binding motif profile. 380 484 IPR000595 -
Cme02g01258 875 PANTHER K+ TRANSPORTER 1-RELATED 6 874 - -
Cme02g01258 875 SMART cnmp_10 380 499 IPR000595 -
Cme02g01258 875 CDD CAP_ED 380 487 IPR000595 -
Cme02g01258 875 ProSiteProfiles KHA domain profile. 806 875 IPR021789 -
Cme02g01258 875 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Cme02g01258 875 PRINTS Ankyrin repeat signature 563 578 IPR002110 GO:0005515
Cme02g01258 875 PRINTS Ankyrin repeat signature 675 689 IPR002110 GO:0005515
Cme02g01258 875 Pfam Ankyrin repeats (3 copies) 534 623 IPR002110 GO:0005515
Cme02g01258 875 Pfam Ankyrin repeats (3 copies) 634 712 IPR002110 GO:0005515
Cme02g01258 875 ProSiteProfiles Ankyrin repeat region circular profile. 562 593 - -
Cme02g01258 875 Gene3D - 63 301 - -
Cme02g01258 875 ProSiteProfiles Ankyrin repeat profile. 562 594 IPR002110 GO:0005515
Cme02g01258 875 SMART ANK_2a 595 624 IPR002110 GO:0005515
Cme02g01258 875 SMART ANK_2a 562 591 IPR002110 GO:0005515
Cme02g01258 875 SMART ANK_2a 529 558 IPR002110 GO:0005515
Cme02g01258 875 SMART ANK_2a 659 688 IPR002110 GO:0005515
Cme02g01258 875 ProSiteProfiles Ankyrin repeat region circular profile. 595 626 - -
Cme02g01258 875 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme02g01258 875 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme02g01258 875 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme02g01258 875 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme02g01258 875 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme02g01258 875 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme02g01258 875 Gene3D - 530 714 IPR036770 -
Cme02g01258 875 Gene3D Jelly Rolls 345 508 IPR014710 -
Cme02g01258 875 SUPERFAMILY cAMP-binding domain-like 305 502 IPR018490 -
Cme02g01258 875 Pfam Cyclic nucleotide-binding domain 400 487 IPR000595 -
Cme02g01258 875 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01258 Cme-Chr2:18174400 Cme04g00388 Cme-Chr4:3111404 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01258 K21867 - csv:101220784 1681.38