Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01259 ATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGGCAAAACCCTAGTGATTCTGATCCTCTGCTTGAGAATCAGAACGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGTACAACTTGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCAGCAATTGGTGGTTATGCATATATCATGGACAAAGACGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCTTTCTTTGTTCTGCTTGGATTCTTTGGGCTCATACTACATTGTTCGTCCCTGAATAGTAATGACCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATCTTGGATTGTTTCCCTGCATCAATGGAAGCCTGTTTTGCACTTGTTATCGTTTTCATAGTTATCTTTGTAATCCTTGGCATAGCTTATGGCTTCCTTGCTGCTACTATGGCCATTCAGAGGATCTGGCAAAGACATTACCACATTCTCACAAAAAGGGAACTGACTAAAGTAAAGATTCTAAACCTGTTAAATGTTTTTTGTTGGTGA 864 41.2 MKGEVQLESSIGQNPSDSDPLLENQNDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFIVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKVKILNLLNVFCW 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18183180 18186494 - MELO3C026628.2.1 Cme02g01259 321148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01259 287 MobiDBLite consensus disorder prediction 7 31 - -
Cme02g01259 287 CDD RING_CH-C4HC3_MARCH 50 101 - -
Cme02g01259 287 MobiDBLite consensus disorder prediction 1 42 - -
Cme02g01259 287 ProSiteProfiles Zinc finger RING-CH-type profile. 42 107 IPR011016 GO:0008270
Cme02g01259 287 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 282 - -
Cme02g01259 287 Pfam RING-variant domain 50 100 IPR011016 GO:0008270
Cme02g01259 287 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 282 - -
Cme02g01259 287 SUPERFAMILY RING/U-box 48 105 - -
Cme02g01259 287 SMART ringv_2 49 101 IPR011016 GO:0008270
Cme02g01259 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 114 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01259 Cme-Chr2:18183180 Cme08g00802 Cme-Chr8:5333640 4.92E-62 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01259 - - csv:101220313 562.762