Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01259 | ATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGGCAAAACCCTAGTGATTCTGATCCTCTGCTTGAGAATCAGAACGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGTACAACTTGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCAGCAATTGGTGGTTATGCATATATCATGGACAAAGACGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCTTTCTTTGTTCTGCTTGGATTCTTTGGGCTCATACTACATTGTTCGTCCCTGAATAGTAATGACCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATCTTGGATTGTTTCCCTGCATCAATGGAAGCCTGTTTTGCACTTGTTATCGTTTTCATAGTTATCTTTGTAATCCTTGGCATAGCTTATGGCTTCCTTGCTGCTACTATGGCCATTCAGAGGATCTGGCAAAGACATTACCACATTCTCACAAAAAGGGAACTGACTAAAGTAAAGATTCTAAACCTGTTAAATGTTTTTTGTTGGTGA | 864 | 41.2 | MKGEVQLESSIGQNPSDSDPLLENQNDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFIVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKVKILNLLNVFCW | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18183180 | 18186494 | - | MELO3C026628.2.1 | Cme02g01259 | 321148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01259 | 287 | MobiDBLite | consensus disorder prediction | 7 | 31 | - | - | |
Cme02g01259 | 287 | CDD | RING_CH-C4HC3_MARCH | 50 | 101 | - | - | |
Cme02g01259 | 287 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cme02g01259 | 287 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 42 | 107 | IPR011016 | GO:0008270 | |
Cme02g01259 | 287 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 282 | - | - | |
Cme02g01259 | 287 | Pfam | RING-variant domain | 50 | 100 | IPR011016 | GO:0008270 | |
Cme02g01259 | 287 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 282 | - | - | |
Cme02g01259 | 287 | SUPERFAMILY | RING/U-box | 48 | 105 | - | - | |
Cme02g01259 | 287 | SMART | ringv_2 | 49 | 101 | IPR011016 | GO:0008270 | |
Cme02g01259 | 287 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 114 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01259 | Cme-Chr2:18183180 | Cme08g00802 | Cme-Chr8:5333640 | 4.92E-62 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01259 | - | - | csv:101220313 | 562.762 |