Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01289 ATGTGTGTTATGGGATCTACTGCAGAATTGAGCTTGGAATGTAAAGTTGAAAGTTATTCAATGTTGCTTAAATATTCATTTGGAGATCATCATGATCATGATCAGTCTTATGATAAGCTTCAAGACTTTGTTTCTCGGCTTGAAGAAGAACGTCTCAAAATTGATGTCTTTAAACGGGAGCTTCCACTTTGCATGCAGCTTTTAACTAATGCTGTTGAGACATCGAGGCGACAGTTACAAGCATGCAAAACGATGGAGGCAGCGGCGGCCGCGGCAGCACCAACAGAGCCAATTCTAGAAGAATTCATGCCATTGAAAAACTCAACGCCGGCGGAGGATGAAAAAACGCCGACAATAACTTCCGACAAGGCAAATTGGATGACGTCAGTTCAGCTTTGGAGTCAAGCAGGCGACGTAATAAGCAAACAACAATCTGAATCTACTGACGATCACTCGAAATTACAAGATTGTAATAATAATAAGGACAATAATTTAGAAACATGCAGCCAAAGAATCAATAATAGTGGAGCTTTTGTTCCTTTCAACAAAGATCGGAGTTCCGGTCCAGCAGCGAAAATGGAGTTATTGGAGAAAGGTGAGAAGAAGAATTGTAGCGATAATAATAGTAATATTGATGGTGGGGTTGTTATGGCGGCGGAGCAAAGGTCTGAAAATGGAGCAGCGGAGGCCGGATCAGCTCCGACCACCACTCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCAAATGCTCGGTGGCTCTCAAGTTGCCACGCCAAAGCAGATAAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTCCACACGAGACGACCCGGTCCAACCCAACAAGCATCAGGACCGCCAGCGGCTCAGCTCGTAGTACTCGGTTTAGGCGGTTTATGGGTCCCACCAGAGTACGCTGCAGCGGCGGCGGCGCCCCCCGCCCTGTACGGCCCAGCGGCCACGTCTCATCCGGCTTCCCACTTCTACACGCCGCCAGAATTTTATGCAAGAACGGCGCCGGCTCCTCATCTGCAGCATCATCATCATCACCAAGTACAGTTATACAAGGGGGCGCCGCCTCAGGCAACCCAAAGCTCCCCGGAATCGGAGGTTAGGGACACGGCGGAACGGTCAGAGAGCTTCGAGGAGGAGAAATCGGGGAGCACTAGCTGGAGAATCGAGGGAGGGGAAAATGCGAGAGGATCTTGTGGGCGGAGATCGGAGGAGAATGAAGAAAGTAATAATAGAAGTGAAATCACTCTCAAATTCTGA 1344 48.66 MCVMGSTAELSLECKVESYSMLLKYSFGDHHDHDQSYDKLQDFVSRLEEERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKTMEAAAAAAAPTEPILEEFMPLKNSTPAEDEKTPTITSDKANWMTSVQLWSQAGDVISKQQSESTDDHSKLQDCNNNKDNNLETCSQRINNSGAFVPFNKDRSSGPAAKMELLEKGEKKNCSDNNSNIDGGVVMAAEQRSENGAAEAGSAPTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPTQQASGPPAAQLVVLGLGGLWVPPEYAAAAAAPPALYGPAATSHPASHFYTPPEFYARTAPAPHLQHHHHHQVQLYKGAPPQATQSSPESEVRDTAERSESFEEEKSGSTSWRIEGGENARGSCGRRSEENEESNNRSEITLKF 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18768798 18771861 - MELO3C025295.2.1 Cme02g01289 321178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01289 447 MobiDBLite consensus disorder prediction 423 447 - -
Cme02g01289 447 SUPERFAMILY Homeodomain-like 239 300 IPR009057 -
Cme02g01289 447 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 444 - -
Cme02g01289 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 444 IPR044787 GO:0003700|GO:0006355
Cme02g01289 447 Gene3D - 241 299 - -
Cme02g01289 447 MobiDBLite consensus disorder prediction 366 447 - -
Cme02g01289 447 MobiDBLite consensus disorder prediction 228 242 - -
Cme02g01289 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Cme02g01289 447 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Cme02g01289 447 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 297 IPR006447 GO:0003677
Cme02g01289 447 MobiDBLite consensus disorder prediction 225 244 - -
Cme02g01289 447 MobiDBLite consensus disorder prediction 394 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01289 - - - csv:101211455 793.497
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01289 Cme05g01953 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01289 Cme-Chr2:18768798 Cme03g00787 Cme-Chr3:14749130 1.75E-61 dispersed
Cme02g01289 Cme-Chr2:18768798 Cme05g01953 Cme-Chr5:28074342 6.45E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g406 Blo01g00709 . Bda01g01870 . . Bpe02g02047 . . Cmo10g00628 Cmo11g00586 Cma05g01320 Cma12g01229 Car05g01236 Car12g01201 . Cpe04g01152 Cpe18g00460 . . . . . . . Cla11g00246 . Cec11g0279 Cco11g0288 Clacu11g0408 Cmu11g0258 Cre11g0755 Cone2ag0272 Cone16ag0767 . . Lsi06g00912 Csa02g00156 Chy05g01345 Cme02g01289 . . . . . . Bma01g00416 Bma06g01048 . Cmo05g01332 Cmo12g01257 Cma10g00587 Cma11g00582 Car10g00543 Car11g00459 Cpe11g01094 Cpe07g00989 . . . . . . . Cla06g01045 Cam06g1170 Cec06g1209 Cco06g1216 Clacu06g1129 Cmu06g1101 Cre06g1910 Lsi11g00287 Csa01g02096 Chy02g01946 Cme05g01953
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002001 2 1 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40897 PF00249 Myb_DNA-binding 9.60E-06 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01289 Cme_Chr02 FPKM 14.858347 16.048164 28.257868 31.247225 12.806021 13.08268 12.956321 10.920949 9.937489 11.139506