Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01289 | ATGTGTGTTATGGGATCTACTGCAGAATTGAGCTTGGAATGTAAAGTTGAAAGTTATTCAATGTTGCTTAAATATTCATTTGGAGATCATCATGATCATGATCAGTCTTATGATAAGCTTCAAGACTTTGTTTCTCGGCTTGAAGAAGAACGTCTCAAAATTGATGTCTTTAAACGGGAGCTTCCACTTTGCATGCAGCTTTTAACTAATGCTGTTGAGACATCGAGGCGACAGTTACAAGCATGCAAAACGATGGAGGCAGCGGCGGCCGCGGCAGCACCAACAGAGCCAATTCTAGAAGAATTCATGCCATTGAAAAACTCAACGCCGGCGGAGGATGAAAAAACGCCGACAATAACTTCCGACAAGGCAAATTGGATGACGTCAGTTCAGCTTTGGAGTCAAGCAGGCGACGTAATAAGCAAACAACAATCTGAATCTACTGACGATCACTCGAAATTACAAGATTGTAATAATAATAAGGACAATAATTTAGAAACATGCAGCCAAAGAATCAATAATAGTGGAGCTTTTGTTCCTTTCAACAAAGATCGGAGTTCCGGTCCAGCAGCGAAAATGGAGTTATTGGAGAAAGGTGAGAAGAAGAATTGTAGCGATAATAATAGTAATATTGATGGTGGGGTTGTTATGGCGGCGGAGCAAAGGTCTGAAAATGGAGCAGCGGAGGCCGGATCAGCTCCGACCACCACTCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCAAATGCTCGGTGGCTCTCAAGTTGCCACGCCAAAGCAGATAAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTCCACACGAGACGACCCGGTCCAACCCAACAAGCATCAGGACCGCCAGCGGCTCAGCTCGTAGTACTCGGTTTAGGCGGTTTATGGGTCCCACCAGAGTACGCTGCAGCGGCGGCGGCGCCCCCCGCCCTGTACGGCCCAGCGGCCACGTCTCATCCGGCTTCCCACTTCTACACGCCGCCAGAATTTTATGCAAGAACGGCGCCGGCTCCTCATCTGCAGCATCATCATCATCACCAAGTACAGTTATACAAGGGGGCGCCGCCTCAGGCAACCCAAAGCTCCCCGGAATCGGAGGTTAGGGACACGGCGGAACGGTCAGAGAGCTTCGAGGAGGAGAAATCGGGGAGCACTAGCTGGAGAATCGAGGGAGGGGAAAATGCGAGAGGATCTTGTGGGCGGAGATCGGAGGAGAATGAAGAAAGTAATAATAGAAGTGAAATCACTCTCAAATTCTGA | 1344 | 48.66 | MCVMGSTAELSLECKVESYSMLLKYSFGDHHDHDQSYDKLQDFVSRLEEERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKTMEAAAAAAAPTEPILEEFMPLKNSTPAEDEKTPTITSDKANWMTSVQLWSQAGDVISKQQSESTDDHSKLQDCNNNKDNNLETCSQRINNSGAFVPFNKDRSSGPAAKMELLEKGEKKNCSDNNSNIDGGVVMAAEQRSENGAAEAGSAPTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPTQQASGPPAAQLVVLGLGGLWVPPEYAAAAAAPPALYGPAATSHPASHFYTPPEFYARTAPAPHLQHHHHHQVQLYKGAPPQATQSSPESEVRDTAERSESFEEEKSGSTSWRIEGGENARGSCGRRSEENEESNNRSEITLKF | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18768798 | 18771861 | - | MELO3C025295.2.1 | Cme02g01289 | 321178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01289 | 447 | MobiDBLite | consensus disorder prediction | 423 | 447 | - | - | |
Cme02g01289 | 447 | SUPERFAMILY | Homeodomain-like | 239 | 300 | IPR009057 | - | |
Cme02g01289 | 447 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 6 | 444 | - | - | |
Cme02g01289 | 447 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 6 | 444 | IPR044787 | GO:0003700|GO:0006355 | |
Cme02g01289 | 447 | Gene3D | - | 241 | 299 | - | - | |
Cme02g01289 | 447 | MobiDBLite | consensus disorder prediction | 366 | 447 | - | - | |
Cme02g01289 | 447 | MobiDBLite | consensus disorder prediction | 228 | 242 | - | - | |
Cme02g01289 | 447 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 239 | 299 | IPR017930 | - | |
Cme02g01289 | 447 | Pfam | Myb-like DNA-binding domain | 244 | 295 | IPR001005 | - | |
Cme02g01289 | 447 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 242 | 297 | IPR006447 | GO:0003677 | |
Cme02g01289 | 447 | MobiDBLite | consensus disorder prediction | 225 | 244 | - | - | |
Cme02g01289 | 447 | MobiDBLite | consensus disorder prediction | 394 | 414 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme02g01289 | Cme05g01953 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01289 | Cme-Chr2:18768798 | Cme03g00787 | Cme-Chr3:14749130 | 1.75E-61 | dispersed | |
Cme02g01289 | Cme-Chr2:18768798 | Cme05g01953 | Cme-Chr5:28074342 | 6.45E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40897 | PF00249 | Myb_DNA-binding | 9.60E-06 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01289 | - | - | csv:101211455 | 793.497 |