Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01289 ATGTGTGTTATGGGATCTACTGCAGAATTGAGCTTGGAATGTAAAGTTGAAAGTTATTCAATGTTGCTTAAATATTCATTTGGAGATCATCATGATCATGATCAGTCTTATGATAAGCTTCAAGACTTTGTTTCTCGGCTTGAAGAAGAACGTCTCAAAATTGATGTCTTTAAACGGGAGCTTCCACTTTGCATGCAGCTTTTAACTAATGCTGTTGAGACATCGAGGCGACAGTTACAAGCATGCAAAACGATGGAGGCAGCGGCGGCCGCGGCAGCACCAACAGAGCCAATTCTAGAAGAATTCATGCCATTGAAAAACTCAACGCCGGCGGAGGATGAAAAAACGCCGACAATAACTTCCGACAAGGCAAATTGGATGACGTCAGTTCAGCTTTGGAGTCAAGCAGGCGACGTAATAAGCAAACAACAATCTGAATCTACTGACGATCACTCGAAATTACAAGATTGTAATAATAATAAGGACAATAATTTAGAAACATGCAGCCAAAGAATCAATAATAGTGGAGCTTTTGTTCCTTTCAACAAAGATCGGAGTTCCGGTCCAGCAGCGAAAATGGAGTTATTGGAGAAAGGTGAGAAGAAGAATTGTAGCGATAATAATAGTAATATTGATGGTGGGGTTGTTATGGCGGCGGAGCAAAGGTCTGAAAATGGAGCAGCGGAGGCCGGATCAGCTCCGACCACCACTCAGACTCACCGGAAAGCTAGACGGTGCTGGTCGCCGGACTTGCACCGGAGATTTGTCAATGCTCTTCAAATGCTCGGTGGCTCTCAAGTTGCCACGCCAAAGCAGATAAGAGAGTTGATGAAAGTAGACGGTTTGACGAACGATGAAGTAAAAAGCCATCTCCAGAAATACCGGCTCCACACGAGACGACCCGGTCCAACCCAACAAGCATCAGGACCGCCAGCGGCTCAGCTCGTAGTACTCGGTTTAGGCGGTTTATGGGTCCCACCAGAGTACGCTGCAGCGGCGGCGGCGCCCCCCGCCCTGTACGGCCCAGCGGCCACGTCTCATCCGGCTTCCCACTTCTACACGCCGCCAGAATTTTATGCAAGAACGGCGCCGGCTCCTCATCTGCAGCATCATCATCATCACCAAGTACAGTTATACAAGGGGGCGCCGCCTCAGGCAACCCAAAGCTCCCCGGAATCGGAGGTTAGGGACACGGCGGAACGGTCAGAGAGCTTCGAGGAGGAGAAATCGGGGAGCACTAGCTGGAGAATCGAGGGAGGGGAAAATGCGAGAGGATCTTGTGGGCGGAGATCGGAGGAGAATGAAGAAAGTAATAATAGAAGTGAAATCACTCTCAAATTCTGA 1344 48.66 MCVMGSTAELSLECKVESYSMLLKYSFGDHHDHDQSYDKLQDFVSRLEEERLKIDVFKRELPLCMQLLTNAVETSRRQLQACKTMEAAAAAAAPTEPILEEFMPLKNSTPAEDEKTPTITSDKANWMTSVQLWSQAGDVISKQQSESTDDHSKLQDCNNNKDNNLETCSQRINNSGAFVPFNKDRSSGPAAKMELLEKGEKKNCSDNNSNIDGGVVMAAEQRSENGAAEAGSAPTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPTQQASGPPAAQLVVLGLGGLWVPPEYAAAAAAPPALYGPAATSHPASHFYTPPEFYARTAPAPHLQHHHHHQVQLYKGAPPQATQSSPESEVRDTAERSESFEEEKSGSTSWRIEGGENARGSCGRRSEENEESNNRSEITLKF 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18768798 18771861 - MELO3C025295.2.1 Cme02g01289 321178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01289 447 MobiDBLite consensus disorder prediction 423 447 - -
Cme02g01289 447 SUPERFAMILY Homeodomain-like 239 300 IPR009057 -
Cme02g01289 447 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 444 - -
Cme02g01289 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 444 IPR044787 GO:0003700|GO:0006355
Cme02g01289 447 Gene3D - 241 299 - -
Cme02g01289 447 MobiDBLite consensus disorder prediction 366 447 - -
Cme02g01289 447 MobiDBLite consensus disorder prediction 228 242 - -
Cme02g01289 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Cme02g01289 447 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Cme02g01289 447 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 297 IPR006447 GO:0003677
Cme02g01289 447 MobiDBLite consensus disorder prediction 225 244 - -
Cme02g01289 447 MobiDBLite consensus disorder prediction 394 414 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01289 Cme05g01953 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01289 Cme-Chr2:18768798 Cme03g00787 Cme-Chr3:14749130 1.75E-61 dispersed
Cme02g01289 Cme-Chr2:18768798 Cme05g01953 Cme-Chr5:28074342 6.45E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40897 PF00249 Myb_DNA-binding 9.60E-06 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01289 - - csv:101211455 793.497