Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01293 AACATCCTGGAAGCCTGCAGTGGCCTGCTTTTGGTTAGGATCCAGCCTTTCCTCTTTTTTCGTCTCGATTTACTCCTTCTCCCTTCCTCTTTCCTTACTCTCACTCTCAATTTTCACTCATATCTCCATTGTTTCTCTCTTTTTCTTAAATGGGTCATCGCCGGAATCCTGGTTTTGTCTCACCTCACCGTCAACAACCTTCTCTCAGAACCAGAGCCAGTCACATATAGAAGACAAAAGAAAACAATCTCCCCATCGTTGTTTTTTCTTCTCCTCATCCTTCATTTGTCTACTTCCAACTCTTTTCTAATGGCTGCAGTGTCTTACTTTACAACCCAGCTCCCATTTTCCCTAATTTCATTTCTCCTCCTCCTCCTTCTTCTTCTTCTTCGTTCTGTTCAATCTGAGCCCACCGCCGACAAGGCTGCTCTTCTTGATTTCTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCTGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGAGACCCGGTCCTTTGTTTTTGCCCTCCGGCTGCCTGGTGTGGGGCTTGTTGGTCCGATTCCGGCAAATACTATCGGCCGGTTGAATCGGCTTCGAGTTCTTAGTCTCCGATCGAATAGAATCACTGGGGATTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGGAGTCTTTATCTGCAGGACAATGAGCTTTCTGGGAATTTTCCGGCAAGTGTGACTCAGTTGACTCGGCTGACTCGACTTGATCTTTCGTCCAATAATTTCTCTGGTCCGATTCCATTTTCGGTGAATAATTTGACCCATTTAAGTGGGCTTTTCTTGGAGAATAATGGGTTTTCAGGTTCTCTGCCGAGTATTCCCGCGGCTGCGACTAGTTTAACGGGATTTAATGTATCGAATAATAAGCTCAATGGATCCATTCCAGAAACCCTTTCGAAGTTCCCTGCTTCATCTTTTGCCGGAAATTTAGCGCTCTGTGGTGGTCCATTGCCGTCGTGCAGCCCGTTTTTTCCTTCCCCTGCTCCGTCGCCGACGTCCGCCGTGAAACCACCACAATTTCCCGTCGAGAAGAAGTCTAAAAGGCTCTCGATCGCTGCCATTGTCGGAATTGTGGTTGGCGCTGCTTTCGTTGCGTTTATATTACTGTTTTTACTTATGTTTTGTCTCCGGAAGCGCGAGCGGAGGCAGCCGGCGAAGCCTCCGAGTACGGTGGTTGCTGCTCGATCTGTTCCAGTTGAGGCAGGTACATCGTCGTCGAAAGACGACATCACCGGGGGATCAGTGGAGACGGAGAAAAACAGATTAGTGTTCTTTGAAGGTGGGGTTTACAGCTTTGATTTGGAGGACTTGTTGAGGGCTTCGGCAGAGGTTTTAGGAAAAGGAAGCGTTGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTGGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTTAAACATGAAAATGTGGTTCCTCTTAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGACTGGGACAACCGGATGAAAATCGCATTAAGCGCAGCAAGAGGATTGGCTCACCTTCATGTGTCGGGAAAACTCGTCCACGGCAACATCAAATCGTCGAACATCCTCCTACGCCCCAACCACGACGCTGCCGTCTCTGACTTCGGTTTGAACCCTCTCTTCGGCGCCTCAACGCCACCCAACCGGATCGCTGGCTATCGCGCGCCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGCTGTTGGAGCTTCTCACCGGGAAATCACCGAACCAAGCGTCGTTGGGTGAAGAAGGGATCGATCTTCCTCGGTGGGTCCAGTCAGTGGTCCGAGAGGAATGGACGGCAGAGGTTTTTGATGTGGAATTAATGAGGTACCACAATATTGAAGAGGAGATGGTTCAACTTTTACAAATTGCCATGGCTTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGAATGATTGAGGAATTGAACCGGGTGGAAACCGACGACGGGCTACGGCAGTCGTCCGATGACCCATCTAAAGGATCAGACGGTCAGACGCCGCCACAAGAGTCGAGCACCACCCCACCCGGAGCTGGCGGACCACCGTAG 2307 50.11 NILEACSGLLLVRIQPFLFFRLDLLLLPSSFLTLTLNFHSYLHCFSLFLKWVIAGILVLSHLTVNNLLSEPEPVTYRRQKKTISPSLFFLLLILHLSTSNSFLMAAVSYFTTQLPFSLISFLLLLLLLLLRSVQSEPTADKAALLDFLNKTPHESRLQWNASASACTWVGVVCDETRSFVFALRLPGVGLVGPIPANTIGRLNRLRVLSLRSNRITGDLPADFSNLGFLRSLYLQDNELSGNFPASVTQLTRLTRLDLSSNNFSGPIPFSVNNLTHLSGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFPASSFAGNLALCGGPLPSCSPFFPSPAPSPTSAVKPPQFPVEKKSKRLSIAAIVGIVVGAAFVAFILLFLLMFCLRKRERRQPAKPPSTVVAARSVPVEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEELNRVETDDGLRQSSDDPSKGSDGQTPPQESSTTPPGAGGPP 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18860631 18863710 - MELO3C025298.2.1 Cme02g01293 321182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01293 768 Gene3D Transferase(Phosphotransferase) domain 1 535 746 - -
Cme02g01293 768 SUPERFAMILY L domain-like 159 322 - -
Cme02g01293 768 Pfam Leucine Rich Repeat 204 226 IPR001611 GO:0005515
Cme02g01293 768 Pfam Leucine rich repeat N-terminal domain 139 174 IPR013210 -
Cme02g01293 768 PANTHER OS05G0480400 PROTEIN 121 746 - -
Cme02g01293 768 MobiDBLite consensus disorder prediction 728 768 - -
Cme02g01293 768 PANTHER OS05G0588300 PROTEIN 121 746 - -
Cme02g01293 768 SUPERFAMILY Protein kinase-like (PK-like) 464 726 IPR011009 -
Cme02g01293 768 Gene3D Ribonuclease Inhibitor 138 295 IPR032675 -
Cme02g01293 768 MobiDBLite consensus disorder prediction 728 742 - -
Cme02g01293 768 Gene3D Phosphorylase Kinase; domain 1 428 534 - -
Cme02g01293 768 MobiDBLite consensus disorder prediction 743 759 - -
Cme02g01293 768 ProSiteProfiles Protein kinase domain profile. 460 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01293 768 Pfam Protein kinase domain 463 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01293 768 Gene3D Ribonuclease Inhibitor 296 342 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01293 Cme05g01954 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01293 Cme-Chr2:18860631 Cme08g02089 Cme-Chr8:26503489 0 dispersed
Cme04g02753 Cme-Chr4:32790058 Cme02g01293 Cme-Chr2:18860631 4.68E-12 transposed
Cme07g01815 Cme-Chr7:23606992 Cme02g01293 Cme-Chr2:18860631 1.07E-51 transposed
Cme09g01576 Cme-Chr9:20678018 Cme02g01293 Cme-Chr2:18860631 1.37E-36 transposed
Cme10g00239 Cme-Chr10:1574589 Cme02g01293 Cme-Chr2:18860631 6.98E-170 transposed
Cme10g01191 Cme-Chr10:12091673 Cme02g01293 Cme-Chr2:18860631 2.38E-07 transposed
Cme01g01718 Cme-Chr1:23994347 Cme02g01293 Cme-Chr2:18860631 8.42E-79 transposed
Cme02g01293 Cme-Chr2:18860631 Cme05g01954 Cme-Chr5:28090976 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64691 PF00069 Pkinase 8.00E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01293 - - cmo:103501524 1178.7