Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01332 ATGGCGATGGCAGATTCTAGCTTTGTTCCGCCGCTTATATACGCTGTGTTTGGAAGCTCTAAACATCTGGCGGTGGGAACAGTGGCGGCCTGCTCGTTGCTCATAGCGGAAACTATTGGTGGAGTTGCTTCGCCGGAAGAAGAACCCACATTGTATCTTCATTTGGTTTTCACCGCCACCTTTGTCACCGGCATCATGCAGGCCGTCTTAGGATTTCTAAGATTGGGAATTTTAGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTGTCTTCAACAACTGAAAGGGATATTTGGACTAACTCATTTCACCTCTAAAACTGACGTTTACTCTGTACTTCATGCCGTTTTCTCTCTTAGAAAAGAGTGGAAATGGGAAAGTGCTGTTGTGGGTGTCATTTTCCTTTTATTCCTCCAGTTTACAAGATACTTGCGAAACAGAAACCCAAAGCTCTTTTGGGTGTCAGCAATGGCTCCCATGGTGACAGTGATAATAGGATGTTTGTTTGCCTATTTCATCAAAGGAAGTCAGCATGGAATCTTAACTGTGGGTCACTTGAGCAAAGGAATAAACCCTATTTCTATTCACTTTTTGAACTTTGATTCCAAATATCTATCAGCTGTAGTACAAACTGGCTTGATCACTGGCCTTGTTGCTTTGGCTGAAGGAATAGCAATTGGTCGAAGCTTTGCGATAATGAAAAATGAACAAATCGATGGGAACAAGGAGATGATAGCCTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAAACTGCAGTGAACTTCAATGCTGGGTGTAGAACAGCAATGTCAAACGTTGTTATGGCAATTTTCATGGCTCTCACTCTCATCTTTCTAGCTCCTGTCTTCAGCTACACACCTCTTGTGGCCCTTTCCGCCATTATCATGTCTGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTAGATAAATTCGATTTTTGCATTTGTATGGCGGCTTTCTTGGGTGTTGCTTTCTTAAGCATGGATGTTGGCATCATGCTTTCGGTGGGACTTGCTTTGCTGAGAGCTCTTCTTTACATGGCTAGACCAGCTACTTGCAAGCTCGGAAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACCAGAACCCATGGGATTATTGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCGAACTACATCAGAGAAAGATGGGTCCGAGATGAGCAGGGCGATTCCAAGGATGGATGCGTCGAACATGTACTCTTGGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACGCTAATCGAAATCCGTAGATCATTACAAGCAAACGGAATCCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCAGAATTCACAAAAACAATCGGGAAAGAGAACATCTATTTATCAGTAGATGAAGGAGTAGAAAGGTGCAGAGATTTAGTTCCGAAATTAAAACAAACAGAAACTAGTCCAGGAAGTTCAAACGTGAGGACAATGGAGCAGCAAAAAAACTGTCACAAACACATCTCTTGTAAACACGTCCATCGTCCGCCACCAACCATCTCTGACGTCGTCCGCCGCAAATCTCTCCCATCCGACATTGTTCAAGATCCAGATCCACACCCAACCCAGAAACCACACCCATCCAATGTCGTTCTAGATCCGTCTGCCGCAAATCTCTCCTATCCAACGTTGCAAAACCCACACCCAGTTCCAAATTGTACCGTTCCAGCTCTCTTCCAACTCTTTGCCAAACAATTCCATCGTTCCAGATCTCTGACACCATCGTTCCAGATCTCCAACACCATCATTCTAGATCTCCAAATCAGTCGTTCCAGATTCCACCACCTTTCTCTATTTCAGACTTTCACTATTCTGCCGCTCTCATTGTTGTTCCAAGATTCGCCGCTCAGATCTGCTACTCTAATCAAAACCATCCACTTTCGTTGTTTGTTTTGTGATTTGATGGAGAAAAATGATATTGTTCATTCTATTAGCACCATTCTTGAGGCTGAACGAATTGGCATTGTCTCCTCTCTTTCATCTGACATTGCTTTTGTAGCCACTCATTCAAGACCTGCAAATGAGTCCACCTTCTACAAAAATTATAAACTTCATGGTCATAAGTTTGCTAACTATCCTACCATTGAGTGTAGGAATTGTCACAAGCAAGGTCATATCTTAGAGAACTGTCCTATTCGTTCAGTCCGCCCTTCTGGTCACTCATATAAACTCAAGGTCTCTCCTAACTCTGGTTCTTCATTTATTGTTCCTGCTGCCACCTCATCTAATGTCACCACACCTCCGAAATCTATAGACAGTACAAGTGATTGGTATGGGACGGATGGTAGGCCGATTATTTGA 2490 43.01 MAMADSSFVPPLIYAVFGSSKHLAVGTVAACSLLIAETIGGVASPEEEPTLYLHLVFTATFVTGIMQAVLGFLRLGILVDFLSHSTILGFMGGTAVIICLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWESAVVGVIFLLFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFIKGSQHGILTVGHLSKGINPISIHFLNFDSKYLSAVVQTGLITGLVALAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNVVMAIFMALTLIFLAPVFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRTHGIIVLQLGSPIYYANSNYIRERWVRDEQGDSKDGCVEHVLLELSGVTSIDMTGIETLIEIRRSLQANGIQMGIVNPRIVVMEKMIASEFTKTIGKENIYLSVDEGVERCRDLVPKLKQTETSPGSSNVRTMEQQKNCHKHISCKHVHRPPPTISDVVRRKSLPSDIVQDPDPHPTQKPHPSNVVLDPSAANLSYPTLQNPHPVPNCTVPALFQLFAKQFHRSRSLTPSFQISNTIILDLQISRSRFHHLSLFQTFTILPLSLLFQDSPLRSATLIKTIHFRCLFCDLMEKNDIVHSISTILEAERIGIVSSLSSDIAFVATHSRPANESTFYKNYKLHGHKFANYPTIECRNCHKQGHILENCPIRSVRPSGHSYKLKVSPNSGSSFIVPAATSSNVTTPPKSIDSTSDWYGTDGRPII 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19261617 19266789 - MELO3C025326.2.1 Cme02g01332 321221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01332 829 MobiDBLite consensus disorder prediction 808 829 - -
Cme02g01332 829 ProSiteProfiles STAS domain profile. 402 519 IPR002645 -
Cme02g01332 829 SUPERFAMILY Retrovirus zinc finger-like domains 745 776 IPR036875 GO:0003676|GO:0008270
Cme02g01332 829 TIGRFAM sulP: sulfate permease 6 514 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme02g01332 829 Pfam Sulfate permease family 6 351 IPR011547 GO:0016021
Cme02g01332 829 Pfam STAS domain 403 514 IPR002645 -
Cme02g01332 829 ProSiteProfiles Zinc finger CCHC-type profile. 760 774 IPR001878 GO:0003676|GO:0008270
Cme02g01332 829 Gene3D STAS domain 382 522 IPR036513 -
Cme02g01332 829 SUPERFAMILY SpoIIaa-like 405 520 IPR036513 -
Cme02g01332 829 PANTHER SULFATE TRANSPORTER 3.5-RELATED 5 527 IPR030316 GO:1902358
Cme02g01332 829 PANTHER SULFATE TRANSPORTER 5 527 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme02g01332 829 CDD STAS_SulP_like_sulfate_transporter 403 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01332 Cme-Chr2:19261617 Cme06g00580 Cme-Chr6:3732248 0 dispersed
Cme02g01478 Cme-Chr2:21622338 Cme02g01332 Cme-Chr2:19261617 5.47E-17 transposed
Cme03g01727 Cme-Chr3:25857379 Cme02g01332 Cme-Chr2:19261617 1.75E-36 transposed
Cme04g01743 Cme-Chr4:25000030 Cme02g01332 Cme-Chr2:19261617 4.22E-07 transposed
Cme08g02110 Cme-Chr8:26705667 Cme02g01332 Cme-Chr2:19261617 9.11E-36 transposed
Cme01g02672 Cme-Chr1:34201307 Cme02g01332 Cme-Chr2:19261617 2.07E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01332 K17471 - csv:116402148 999.579